Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1236 ATGGCAACGTTAGAATCAACCTTAACTGTATTCACACATCAACGTTTCTCAAATAACAACAACTATCGTTTCTTATCAAAATCACCAGATTCCATAAAACTCCATGCTTCAACTTCAATCCCTTCTTCTTCTTCTTTTTCCCTTTTCTCTCACAATAACCACAAACTTCACTTTTCTTCTTCTTCCAAATCCAAAACACTCTGTTACGCTTTACAAGAGGTAACAGAAGCTTCAGCAACAACTGAAGAAGAGGAAGCAAAAACAGAAACATTGAACAACGTTAAGAAGAACCTCATTGTCTTTAACTTACCTTGGTCTCTTTCTAAGCCGGATATCAAGGATCTCTTCGGTCAATGTGGAACTGTAATTGACGTTGAGATTATAAAGAGCAAAGATGGGAAGGGAAAAGGTTATACATTTGTTACTATGGATTCAGGAGAGGGGGCTCAGGCTGCTGTCGATAAATTTAATGCTACTGAAATATCAGGCCGGATATTAAGGGTAGAGTTTGCAAAGGGATTTAAGAAACCTCGTCCACCTCCTCCAGCTCCCACTCCTAAGGAAGCACGTTATGTAATCTATGCATCCAACCTTGCGTGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTCAAGTCCCTGGTGGGAAATCTGCTGGGTATGGATTTGTTTCTTATCATACGGAGGAGGAAGCAGAAGCTGCCATTTCTGCTTTGCAAGGGAAGGAGTTACTTGGACGACCACTTCTCGTAAAAATAAGTGAAAGAAAAGTTAAAGAAGCTGGAAGTGAAGAAGTTGAAGAGAAAGTTGACGACGTGCAACCAGAAGCTGGAAGTGAAGAAGTTGAAGAGAAAGTTGACGACGCTCAACCAGAAGAGTCATAA 927 0.4067 MATLESTLTVFTHQRFSNNNNYRFLSKSPDSIKLHASTSIPSSSSFSLFSHNNHKLHFSSSSKSKTLCYALQEVTEASATTEEEEAKTETLNNVKKNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERKVKEAGSEEVEEKVDDVQPEAGSEEVEEKVDDAQPEES* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1236 308 Gene3D - 177 283 IPR012677 -
Mtr5g1236 308 Gene3D - 50 176 IPR012677 -
Mtr5g1236 308 MobiDBLite consensus disorder prediction 274 294 - -
Mtr5g1236 308 SUPERFAMILY RNA-binding domain, RBD 177 273 IPR035979 GO:0003676
Mtr5g1236 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Mtr5g1236 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 263 IPR000504 GO:0003723
Mtr5g1236 308 MobiDBLite consensus disorder prediction 274 308 - -
Mtr5g1236 308 PANTHER CHLOROPLAST, PUTATIVE-RELATED 6 286 - -
Mtr5g1236 308 SMART rrm1_1 192 266 IPR000504 GO:0003723
Mtr5g1236 308 SMART rrm1_1 97 169 IPR000504 GO:0003723
Mtr5g1236 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Mtr5g1236 308 PANTHER OS02G0815200 PROTEIN 6 286 - -
Mtr5g1236 308 SUPERFAMILY RNA-binding domain, RBD 92 180 IPR035979 GO:0003676
Mtr5g1236 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1236 Mtr-Chr5 12670015 12675466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1236 85 271 Eukaryotic Initiation Factors Gene Family AT4G34110 31.034 5.94e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1236 - - gmx:100793319 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1236 5 12670015 12675466 Mtr5g1236 5 12670015 12675466 ECH