Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1235 ATGGCTTCTCTTGGAAATCCAAAAGCTTGGGTTCCATATATGAATAGCAAAGATTGTTCTCAAGGTTTTTGTAGCGTCTATTGTCCACAATGGTGCTATGCAATCTACCCTCCACCTTCTCCTTCTCCCTTTGAATTCCCTGATGAAGATTCAAGTCCAAATTTTTCTCCTCTTGTCATTGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTAACTTACTACACCATAATATCAAAGTATTGTGGTCGCAGAGAATCATCGGCGAGTGAATCGCGTGAAGCAAACGATGAATTTGAAGACGACCATCATCATCATCATAACCCTTCGATCCATGAACCATGGCATGTTTCAACAAATGGATTAGATGAAACTTTGATCAAGTCCATAACAGTTTGCAAATACAAAAAGAATGATGGATTGGTTGATGTAACAGATTGTTCTGTTTGTCTAAACGAGTTTCAAGACGATGAGAGTATTAGACTTTTACCTAAATGTAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCATTCTAATTGTCCTCTTTGTCGTGCTACCATATTCGCCTTCAACTCTTCAAATTCAAGTGCTGCAACACTTCATCTGCCAGCTCCTGTTATAGAAAATCCTTCAACGAATGAAGTTTCCTTAGAAACTCAACATCCGAATGAAGTTTTAGATGTTGAAAGAGACAATGAATTGGATGTGGTGGAAGAAGTTCCAATTCCGAAGACAGAATTTCGTGCTTTAAGTGATTTAGGAAATTTAAGAGGAAGGCATAGTGTGATTGAGATTAGAGATCATAATGAAGATTATCATGAATCAATTCGAAGATCGTTTTCTATGGATCATTCATTTCAAAGTGGTGTTTTGAATGTTGATGATGTTAATGTTATGCATATGAATCAAGAACAAGATTGTTCTCAAGGTGAAGGTTCATCAAAGAGGTTAAGAGGTGAAAGTGAAAGTAGCAAGTGTAGTTATAGAAGAAAGGTTTTGCATTGTGTGCTAAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTCCTTAGCAGAAGTGGTAGAGGAAGGCTTGGAGTTTTGCCACTCTAA 1119 0.3709 MASLGNPKAWVPYMNSKDCSQGFCSVYCPQWCYAIYPPPSPSPFEFPDEDSSPNFSPLVIAIIGILASAFLLVTYYTIISKYCGRRESSASESREANDEFEDDHHHHHNPSIHEPWHVSTNGLDETLIKSITVCKYKKNDGLVDVTDCSVCLNEFQDDESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNSSNSSAATLHLPAPVIENPSTNEVSLETQHPNEVLDVERDNELDVVEEVPIPKTEFRALSDLGNLRGRHSVIEIRDHNEDYHESIRRSFSMDHSFQSGVLNVDDVNVMHMNQEQDCSQGEGSSKRLRGESESSKCSYRRKVLHCVLSPIAMKRSFSSGRFFLSRSGRGRLGVLPL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1235 372 MobiDBLite consensus disorder prediction 93 113 - -
Mtr5g1235 372 SMART ring_2 148 189 IPR001841 -
Mtr5g1235 372 Pfam Ring finger domain 147 190 IPR001841 -
Mtr5g1235 372 MobiDBLite consensus disorder prediction 93 117 - -
Mtr5g1235 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 197 IPR013083 -
Mtr5g1235 372 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 363 - -
Mtr5g1235 372 SUPERFAMILY RING/U-box 128 196 - -
Mtr5g1235 372 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Mtr5g1235 372 CDD RING-H2_PA-TM-RING 147 190 - -
Mtr5g1235 372 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 363 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1235 Mtr-Chr5 12664758 12666557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1235 6 372 C3H Transcription Factor Family AT5G17600 40.674 4.23e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1235 - - gmx:100792267 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1235 5 12664758 12666557 Mtr5g1235 5 12664758 12666557 ECH
Mtr5g1235 5 12664758 12666557 Mtr8g2051 8 30355453 30357362 PCT