Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1234 ATGGCACCTTCTTTTGACATTACTAGTCACACTGTTTGTGTCATGGATGCTTCAGGTCAATTAGGCTTTAGCCTTGTTCAAAGACTTCTTCAAAGAGGCTATACCGTTCATGCATCCATTCAACAATATGGAGAAAATCCATTCAATGGGATTTCAGCTGATTCTGATAAACTCAAGATTTTTCGATCAGACCCTTTTGATTATCATAGCATAATTGATGCTCTTAGAGGTTGCTCTGGATTGTTTTACTCATTTGAACCTCCCCTTGACCAACCCAATTATGATGAATATATGGCTGACGTGGAAGTTAGAGCAGCACACAACGTGCTTGAAGCTTGTGCTCAAACAGAAACAATAGACAAAGTTGTGTTCACATCCTCAGCAACTGCTGTGGTTTGGAGGGAAGATCGTAAAACCATAGAACCTGATTTGGATGAAATACATTGGAGTGATGTTAATTTCTGTCGCAAATTCAAGTTATGGCATGGGATGTCAAAGACACTAGCAGAGAAAACAGCGTTTGCCTTAGCAATGGACAGAGGAGTGAACATGGTATCAATCAATGCAGGACTATTGATGACACATGATCTCTCCATTAAACACCCTTACTTGAGAGGAGCTGCTGAAATGTACGAGGATGGTGTCTTTGTGACCGTTGATTTAGGATTTTTGGTGGATACTCATATCTGTGTCTACGAGGATGTCTCATCGTACGGTCGTTATTTATGCTTTAATCACATTATTAATACTCAAGACGACGCCGTTCAGCTTGCACATAAGTTAACACCTACCGCATCTTCTTCCTTACCACAAAGTGATGACTATGGAAAGAGTTACATTGAACAGAAAATAAGCAACAAGAAGTTGAACAAATTGATGGTGGACTTTGAGGCTTAA 897 0.3991 MAPSFDITSHTVCVMDASGQLGFSLVQRLLQRGYTVHASIQQYGENPFNGISADSDKLKIFRSDPFDYHSIIDALRGCSGLFYSFEPPLDQPNYDEYMADVEVRAAHNVLEACAQTETIDKVVFTSSATAVVWREDRKTIEPDLDEIHWSDVNFCRKFKLWHGMSKTLAEKTAFALAMDRGVNMVSINAGLLMTHDLSIKHPYLRGAAEMYEDGVFVTVDLGFLVDTHICVYEDVSSYGRYLCFNHIINTQDDAVQLAHKLTPTASSSLPQSDDYGKSYIEQKISNKKLNKLMVDFEA* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1234 298 CDD FR_SDR_e 12 294 - -
Mtr5g1234 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 264 IPR036291 -
Mtr5g1234 298 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 8 297 - -
Mtr5g1234 298 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 297 - -
Mtr5g1234 298 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 140 IPR002225 GO:0003854|GO:0006694|GO:0016616
Mtr5g1234 298 Gene3D - 4 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1234 Mtr-Chr5 12653807 12657049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1234 11 296 Monolignol Biosynthesis Gene Families AT5G58490 30.592 1.73e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1234 - - gmx:100790333 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1234 5 12653807 12657049 Mtr5g1234 5 12653807 12657049 ECH