Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1230 ATGGGTAGGTCACCATGTTGTGATGAAATTGGTGTAAAGAAAGGGCCATGGACACAAGAAGAAGATGAGAAGCTGATTGATTATATCAACAAACATGGCCATGGAAATTGGGGAACACTTTCAAAACGTGCTGGTTTGAATAGGTGTGGGAAGAGTTGTAGGTTAAGGTGGACAAATTATTTGAGGCCTGATATCAAGAGAGGGAAATTCACTGATGAAGAAGAAAGAGTTATCATCAACCTTCATTCAGTTCTTGGAAACAAATGGTCGAAGATTGCAGCTCATCTACCAGGACGAACAGATAACGAGATAAAAAATTATTGGAACACAAACATAAGGAAAAAGCTTCTCAAGATGGGAATTGATCCTGAAACTCACAAGCCAAGAACTGATTACAATCACCTCATGAGTCTTTCAAACTTACTTGGCATGTCAAATATAGGCAATACTTTTAGCAACAACCCTCTTGGTTTACAACCAGATATTACCCACCTAGCCAAAATGCAATTGTTGCAAAATATGTTGCAAATTATGAACACAAATAATTCATTTGGTAACATGGGAAATTATCCTTATAACCCCTTAGGGAATATTAACCCTAGCTTTAATCCATTCAATTTGTTTTTGAATGGAACAAACACAATTCAAACTAATGAGCCATTAGGTTTGAGTGGTGGTGAAGAATATGCTATGAACCCTAGTTTATACTCTTATGGACAAAGTGAGTCTTCAAAGCAGGATATTTCAAAAGGTGAATCAAGTTTACAAGATCTTGATTATAGCAAAATGAGAAGCATTTCATGTGTAAATCAAGAAGAAAATCTACTTCCTGCTTTGGTTGCTTCCTCTCCTAGAATTGGAATCTTCAATCAAATCGAAAATGACCGCAACAAAGCTCAAATGTCCATCGATCACTCACCTTCAAATGCAATCTTTGATGATTGGGAGAAGTTCCTTGACGATGAATCAAGTGGTGGTTCCTACTGGAAAGAGCTTTTAGACTTGACATCCACTTCTGCGTCACAAATTTCGTGGTAG 1038 0.3728 MGRSPCCDEIGVKKGPWTQEEDEKLIDYINKHGHGNWGTLSKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTDEEERVIINLHSVLGNKWSKIAAHLPGRTDNEIKNYWNTNIRKKLLKMGIDPETHKPRTDYNHLMSLSNLLGMSNIGNTFSNNPLGLQPDITHLAKMQLLQNMLQIMNTNNSFGNMGNYPYNPLGNINPSFNPFNLFLNGTNTIQTNEPLGLSGGEEYAMNPSLYSYGQSESSKQDISKGESSLQDLDYSKMRSISCVNQEENLLPALVASSPRIGIFNQIENDRNKAQMSIDHSPSNAIFDDWEKFLDDESSGGSYWKELLDLTSTSASQISW* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1230 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr5g1230 345 CDD SANT 69 112 IPR001005 -
Mtr5g1230 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr5g1230 345 CDD SANT 16 61 IPR001005 -
Mtr5g1230 345 Gene3D - 69 116 - -
Mtr5g1230 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr5g1230 345 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Mtr5g1230 345 PANTHER MYB TRANSCRIPTION FACTOR 1 336 - -
Mtr5g1230 345 Gene3D - 13 66 - -
Mtr5g1230 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr5g1230 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr5g1230 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr5g1230 345 SMART sant 66 114 IPR001005 -
Mtr5g1230 345 SMART sant 13 63 IPR001005 -
Mtr5g1230 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1230 Mtr-Chr5 12599238 12601434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1230 1 334 MYB Transcription Factor Family AT5G16770 48.718 6.37e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g1230 Myb_DNA-binding 4.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1230 K09422 - gmx:778082 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1230 5 12599238 12601434 Mtr5g1230 5 12599238 12601434 ECH