Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1226 ATGGAATCCAAAGAAGGTGATGAGAGAAAAAAAGAACACAAAGTTTCTATGTTAAAGCTATTTTCTTTTGCTGACTCTTATGATTATGTCTTAATGTTTATTGGATCTATTGGAGCCATTGTTCATGGTGCTTCTGTTCCTATTTTCTTTATTTTCTTTGGAAAGTTGATCAATGTTATTGGCTTGGCTTATCTTTTCCCTAAGGAAGCCTCTCACAAAGTTGCCAAGTACTCATTGGATTTTGTGTATCTAAGTGTAGCAATATTATTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGAGAAAGACAAGCAGCAAAGATGAGAATGGCTTATTTAAAGTCTATGTTAAATCAAGATATAAGTTTATTTGATACTGAGGCATCCACTGGAGAGGTCATTTCTGCTATTACAAGTGACATTATTATTGTTCAAGATGCTCTATCAGAGAAGGTAGGGAACTTCTTGCACTACATAAGCAGATTCATTGCTGGATTTACAATTGGATTTGTGAGAGTGTGGCAGATTAGTTTAGTGACACTTTCAATTGTCCCAGCGATTGCCCTTGCTGGAGGTTGTTATGCATATGTTACTATTGGCCTTATTGCAAAAGTTAGAAAAGCATATGTCAGGGCTGGTGAAATTGCTGAAGAGGTCATAGGCAATGTCAGAACAGTTCAAGCATTTGCAGGAGAAGAAAGAGCAGTAAGATCATATAAAGCAGCTCTTATGAAAACTTACGTAAACGGTAGAAAAGCAGGATTAGCAAAGGGTCTTGGACTTGGCTCAATGCATTGTGTTCTGTTTCTATCTTGGGCTTTACTTGTTTGGTACACTAGTGTTGTTGTTCACAAGAACATTGCCAATGGTGGCGAGTCATTCACTACCATGCTCAACGTCGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGATATCTCGGCATTTATCCGAGCAAAGGCAGCAGCTTATCCCATTTTTGAGATGATAGAGAGGGATACAGTGAGCAAAAAAAGCTCAAAAACTGGTCGAAAATTAAGCAAATTGGATGGTCATATCCAGTTTAACGATGTCTGTTTCAGTTATCCGTCTCGTCCAGATGTAGGAATCTTCACCAACCTAAATCTGGACATTCCTGCAGGGAAAATTGTAGCACTTGTGGGAGGAAGTGGTTCCGGAAAAAGCACTGTTGTATCGTTGATCGAACGTTTTTATGAACCAATTTCTGGTCAGATACTTTTAGACAAGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGGCAACAAATTGGACTAGTTAATCAAGAACCTGCACTTTTTGCTACAAGCATCAAGGAGAATATTTTGTATGGGAAAGATGATGCTACTCTTGAAGAACTAAAACGTGCTGTAAAGCTTTCGGATGCTCAATCTTTCATCAACAACCTTCCCGAAAGATTAGACACTCAGGTTGGTGAGAGAGGGATACAACTATCAGGTGGACAGAAGCAAAGGATTGCGATATCTCGGGCGATCGTGAAGAATCCATCGATCCTTTTATTAGATGAAGCAACTAGTGCTTTGGATGCGGAGTCTGAGAAGAGTGTACAGGAGGCTCTCGATCGTGTCATGGTTGGAAGAACAACAATTGTAGTTGCACACAGACTTTCTACCATTAGGAATGCAGATGTTATAGCTGTTGTTCAAGGAGGGAGGATTGTGGAGACCGGTAACCATGAAAAACTCATGTCCAATCCAACTAGTGTTTATGCATCTCTTGTTCAACTCCAAGGAGCAAGTTCTTTGCAACGCCTTCCCTCGGTCGGTCCTAGCCTAGGACGCCAATCAAGCATAAGCTACTCAAGAGAATTATCACGTACTGGAACAAGCATCGGTGGTAGTTTTCGTTCGGACAAAGACTCGATTGGCCGTGTTGGTGGTGATGATGTAAGCAAGTCAAAGCATGTTTCAGCAAAAAGACTATATTCTATGATTGGTCCTGACTGGCCTTATGGATTTTTTGGGACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCACTTTTTGCACTAGGAATCTCTCATGCTCTTGTCTCATATTATATGGATTGGGAGACAACGCAGCGCGAAGTTAGGAAAATTGCTTTCCTCTTCTGTGGAGGTGCAGTTATAACTATCACAGTCCATGCCATTGAACATCTTTTTTTCGGTATCATGGGCGAGCGACTTACCCTTCGCGTGCGAGAAATGATGTTTACTGCTATTTTGAAGAATGAAATAGGATGGTTTGATGAAACAACCAACACAAGTTCCATGCTTTCATCGCGTTTAGAGTCCGACGCAACTTTAATGCGAACAATAGTTGTTGATCGCTCGACAATTCTGTTACAGAATCTTGGTCTGGTTGTTGCTTCGTTTATTATTGCCTTCCTTTTGAACTGGAGAATAACACTTGTTGTCTTGGCCACATATCCTTTGATAATTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGCGAGGCTGTGAGCAACATACGCACTGTTGCTGCATTTTGTTCTGAAGAAAAGATTCTTGATCTATATGCTGACCAGCTCGTCGGTCCTTCCAAACATTCATTTCGGCGCGGCCAAATTGCCGGCTTATTCTATGGCATTTCTCAGTTCTTCATTTTCTCATCTTATGGCCTTGCCTTATGGTACGGATCTGTTTTGATGGGAAAGGAACTTGCTAGCTTTAAATCAGTTATGAAGTCATTTATGGTTTTGATTGTAACAGCACTTGCTATGGGGGAAACTTTGGCACTAGCACCAGATCTTTTGAAAGGGAACCAAATGGTTGCTTCAGTTTTTGAAGTAATGGATAGAAAGTCAGAAATTAAAGGTGATGCCGGAGAAGAGTTGAAGACAGTCGAGGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGGCCAGATGTTATTATTTTCAAGGATTTTAGTCTAAGAGTTCCTTCAGGCAAAAGTGTTGCCTTAGTGGGACAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCACTTATACTCAGATTTTATGATCCAACATCAGGAAAGGTGTTAATTGATGGAAAAGACATCACAAGAATAAATCTAAAATCTCTTAGAAAACACATTGGTCTTGTACAACAAGAACCAGCACTTTTCGCTACATCAATTTACGAAAACATTCTTTATGGAAAGGAAGGTGCATCTGATTCAGAAGTAATTGAAGCAGCTAAGCTAGCAAATGCTCATAACTTCATAAGTGCACTTCCAGAAGGTTACTCAACCAAAGTAGGTGAAAGAGGTGTGCAACTATCTGGTGGACAAAGACAAAGGGTAGCCATTGCTAGAGCTGTTTTAAAGAATCCTGAAATATTGCTTCTAGATGAAGCAACTAGTGCACTTGATGTCGAATCGGAGCGTATTGTACAACAAGCTCTTGACCGATTGATGCAGAATAGAACAACAGTTATGGTGGCACATAGGTTGTCAACAATAAGGAATGCAGATCAAATCTCAGTTTTGCAAGATGGAAAGATTATTGAGCAAGGGACTCATTCAAGTCTTATAGAGAATAAAGATGGACCGTATTATAAATTAGTCAACCTTCAACAACAACAAAATCATCAATCATAG 3705 0.4027 MESKEGDERKKEHKVSMLKLFSFADSYDYVLMFIGSIGAIVHGASVPIFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSVAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFLHYISRFIAGFTIGFVRVWQISLVTLSIVPAIALAGGCYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVRSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWALLVWYTSVVVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKKSSKTGRKLSKLDGHIQFNDVCFSYPSRPDVGIFTNLNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPISGQILLDKNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPERLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADVIAVVQGGRIVETGNHEKLMSNPTSVYASLVQLQGASSLQRLPSVGPSLGRQSSISYSRELSRTGTSIGGSFRSDKDSIGRVGGDDVSKSKHVSAKRLYSMIGPDWPYGFFGTLCAFVAGAQMPLFALGISHALVSYYMDWETTQREVRKIAFLFCGGAVITITVHAIEHLFFGIMGERLTLRVREMMFTAILKNEIGWFDETTNTSSMLSSRLESDATLMRTIVVDRSTILLQNLGLVVASFIIAFLLNWRITLVVLATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYADQLVGPSKHSFRRGQIAGLFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSEIKGDAGEELKTVEGTIELKRINFSYPSRPDVIIFKDFSLRVPSGKSVALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDITRINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISALPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKDGPYYKLVNLQQQQNHQS* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1226 1234 Pfam ABC transporter 375 523 IPR003439 GO:0005524
Mtr5g1226 1234 Pfam ABC transporter 1008 1156 IPR003439 GO:0005524
Mtr5g1226 1234 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 1230 IPR039421 -
Mtr5g1226 1234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 982 1227 IPR027417 -
Mtr5g1226 1234 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 10 1230 - -
Mtr5g1226 1234 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 989 1225 IPR003439 GO:0005524
Mtr5g1226 1234 SMART AAA_5 383 569 IPR003593 -
Mtr5g1226 1234 SMART AAA_5 1016 1202 IPR003593 -
Mtr5g1226 1234 Gene3D - 979 1234 IPR027417 -
Mtr5g1226 1234 SUPERFAMILY ABC transporter transmembrane region 20 326 IPR036640 GO:0005524|GO:0016021
Mtr5g1226 1234 Pfam ABC transporter transmembrane region 670 942 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g1226 1234 Pfam ABC transporter transmembrane region 32 304 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g1226 1234 Gene3D ABC transporter type 1, transmembrane domain 19 958 IPR036640 GO:0005524|GO:0016021
Mtr5g1226 1234 ProSitePatterns ABC transporters family signature. 1128 1142 IPR017871 GO:0005524
Mtr5g1226 1234 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 329 - -
Mtr5g1226 1234 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 670 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g1226 1234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 594 IPR027417 -
Mtr5g1226 1234 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 356 592 IPR003439 GO:0005524
Mtr5g1226 1234 CDD ABC_6TM_Pgp_ABCB1_D2_like 659 974 - -
Mtr5g1226 1234 CDD ABC_MTABC3_MDL1_MDL2 989 1227 - -
Mtr5g1226 1234 CDD ABC_MTABC3_MDL1_MDL2 356 594 - -
Mtr5g1226 1234 Gene3D - 346 605 IPR027417 -
Mtr5g1226 1234 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g1226 1234 SUPERFAMILY ABC transporter transmembrane region 656 973 IPR036640 GO:0005524|GO:0016021
Mtr5g1226 1234 ProSitePatterns ABC transporters family signature. 495 509 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1226 Mtr-Chr5 12561975 12571395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1226 15 1233 Calmodulin-binding Proteins AT2G36910 50.643 0.0 1217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1226 K05658 - gmx:100819045 2162.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1226 5 12561975 12571395 Mtr5g1226 5 12561975 12571395 ECH