Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1224 ATGTTTGAAACATCGCTTAAAATTGAGGAGGAGGTGAATTCAATTCCATCAAACATGAGTGGGAGATATCACCGCAACAAATCACAACAACAACATCGTACCAAATCGAAACTTCGCTACGTTAACAAATCCGAACTAATTGTTTCTTCACCTAACTCTGTGGCGGTTGAACAACCAGTTTCCTCTGAGGATGTTATTGTCAACAACAACAACAACACCGTTGATGACGTGGCCAGTTCAAGCAAGACCAAGACCAAGGAAGAATATGATTATGATAATAACGATATTGATAATGGTATGGATAATACTAATAGGCTTGATAAGTTGCTTACTGATATTCAACAAATTGAATTATCCGAGGAAGAGATCACAATCAATGATCAATTGCAGCAAGATGAGTTACTTGTGGTGGAATCAATTTATGGAGAAAACGTTTTCAGCCTTGATACATGGAAAGGCCTGCGTTGTTTTCAGATACACATAAACATTGATGTTTTGGGTGAAATAGGCATTACTGCCAAGGTTAACTCTGTTAATGAACTTGAGACATTAAGCAACAATTCAGACGATTTCTTATACTCTTTCAAAGTTCAATATCTTCCACCGATTGTTTTGACATGTTTATTACCTAAGTCATATCCGAGTCACCAACCGCCTATATTTACAATCTCTGTCAAGTGGCTGGAATCTGCGAAGATTTTAAGTTTATGTTCCAAGTTGGATTCAATATGGACAGAACAACAAGGGCAGGAAGTGATTTACAGTTGGGTAGAATGGTTACAAAATTCTTCTCTTTCTCATTTGGGATTTGATGAGGAGATTAGATTAGGTCCTTATGGTTGGAATCGTGTTGCGGATGCACGCGTGGTTTCGGGAATTGGATGCATTGATGCTGATATTCCTTTTTTACAAAGCTACAACAATGAGAGACGCCATCAAAACTTCCTTAAAGAATTGCATGAATGCTGTGTTTGCTATAGTGAATATCCAGGTACCGAATTCGTCCGGTTACCATGCAAACATTTTTTTTGCCGCAAATGCTTACAGACCTTTACACAGATACATGTAAAGGAAGGAAACGTTAGTAATCTTCAATGTCTTGATGCAAAATGCAAGGAGATGATTCCACCAGGCCTTTTAAAACACTTTCTTGGTGATGAAGAATACGAACGTTGGGAATCTATGATGTTAGAGAAAACACTTGCATCAATGTCTGATGTTGCTTATTGCCCGAGATGTGAAACACCCTGTATAGAGGAGGAAGACCAACATGCTCAGTGCCCAAAATGCTTTTTTAGCTTTTGTACCCTTTGCAGGGAACGCCGCCATGTTGGCATTGCATGCATGACCCTTGAAATGAAGCTTCAGCTTCTTCAGGATCGTCAAAATTCATCTCATTTAAAGGGGAATCAAAAGCAAATTGAACTTGCAAAGATTAATGAAATGCTCAGTATCAAAGCAATTCACCGTGATTCCAAGTTGTGCCCCTATTGTGACATGGCGATTTCTCGAACTGGAGGTTGTAACAAAATGAAGTGCGGTAATTGTGGAAAGTACTTCTGTTACCTCTGCAACAAAGCACTCGATCCATCAGATCCATATGGACATTTCAGGGAAGGGGGGTCCTGTGAATTGTTCCCACAAGAAATGGTTGACAATTGGCAACCACGAATCAATCCTCGCCAGGAAGTACAACAAATACATGCGGAACTCTTTCACCTCGGTGGCTCAGCTTGTCCTAGTTGTCGCCAATTTAATGTAAAGATTGGAAACAATAATCACATGTTATGTTGGGCATGCCAAAGCCATTACTGCTACTTATGCAACAAGACTGTGAGGCGCGGGACTAAACATTATGGACCAAAAGGTTGCAAACAGCACACTGAAGGATAG 1893 0.3988 MFETSLKIEEEVNSIPSNMSGRYHRNKSQQQHRTKSKLRYVNKSELIVSSPNSVAVEQPVSSEDVIVNNNNNTVDDVASSSKTKTKEEYDYDNNDIDNGMDNTNRLDKLLTDIQQIELSEEEITINDQLQQDELLVVESIYGENVFSLDTWKGLRCFQIHINIDVLGEIGITAKVNSVNELETLSNNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESAKILSLCSKLDSIWTEQQGQEVIYSWVEWLQNSSLSHLGFDEEIRLGPYGWNRVADARVVSGIGCIDADIPFLQSYNNERRHQNFLKELHECCVCYSEYPGTEFVRLPCKHFFCRKCLQTFTQIHVKEGNVSNLQCLDAKCKEMIPPGLLKHFLGDEEYERWESMMLEKTLASMSDVAYCPRCETPCIEEEDQHAQCPKCFFSFCTLCRERRHVGIACMTLEMKLQLLQDRQNSSHLKGNQKQIELAKINEMLSIKAIHRDSKLCPYCDMAISRTGGCNKMKCGNCGKYFCYLCNKALDPSDPYGHFREGGSCELFPQEMVDNWQPRINPRQEVQQIHAELFHLGGSACPSCRQFNVKIGNNNHMLCWACQSHYCYLCNKTVRRGTKHYGPKGCKQHTEG* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1224 630 Gene3D Ubiquitin Conjugating Enzyme 118 269 IPR016135 -
Mtr5g1224 630 SUPERFAMILY RING/U-box 568 627 - -
Mtr5g1224 630 ProSiteProfiles Zinc finger RING-type profile. 322 366 IPR001841 -
Mtr5g1224 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 405 IPR013083 -
Mtr5g1224 630 SUPERFAMILY RING/U-box 390 453 - -
Mtr5g1224 630 MobiDBLite consensus disorder prediction 15 35 - -
Mtr5g1224 630 SUPERFAMILY UBC-like 128 271 IPR016135 -
Mtr5g1224 630 ProSiteProfiles TRIAD supradomain profile. 318 547 IPR044066 -
Mtr5g1224 630 SMART RWD2001b 132 267 IPR006575 GO:0005515
Mtr5g1224 630 Pfam IBR domain, a half RING-finger domain 485 528 IPR002867 -
Mtr5g1224 630 Pfam IBR domain, a half RING-finger domain 390 448 IPR002867 -
Mtr5g1224 630 SMART ring_2 322 413 IPR001841 -
Mtr5g1224 630 SMART ring_2 495 582 IPR001841 -
Mtr5g1224 630 Pfam RWD domain 128 263 IPR006575 GO:0005515
Mtr5g1224 630 SMART ibrneu5 390 448 IPR002867 -
Mtr5g1224 630 SMART ibrneu5 477 543 IPR002867 -
Mtr5g1224 630 ProSiteProfiles RWD domain profile. 132 267 IPR006575 GO:0005515
Mtr5g1224 630 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 108 575 IPR031127 GO:0004842|GO:0016567
Mtr5g1224 630 SUPERFAMILY RING/U-box 317 401 - -
Mtr5g1224 630 SUPERFAMILY RING/U-box 482 538 - -
Mtr5g1224 630 ProSitePatterns Zinc finger RING-type signature. 339 348 IPR017907 -
Mtr5g1224 630 Gene3D - 464 574 - -
Mtr5g1224 630 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 108 575 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1224 317 551 ARIADNE family AT3G27710 24.380 2.25e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1224 K11971 - gmx:100500662 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1224 5 12535886 12543173 Mtr5g1224 5 12535886 12543173 ECH