Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1222 ATGGATGGAGCAAGCGGCGGCAGTGGCGGCGGAGAGGGTTCAGCCACCCAAATACCGGCGCCGACACCGATGCAAAACGCGAACGCACCTCCACCGTTTTTGAGCAAAACGTATGACATGGTGGATGATCCTTCAACGGATGCGATTGTTTCATGGAGCGCAACCAACAACAGTTTCGTTGTTTGGGACCCGCCGGAATTCGCTAGAGACCTTCTGCCGAAGTTTTTCAAGCATAACAATTTCTCAAGCTTCGTGAGACAGTTGAATACTTATGGTTTCAGGAAGGTCGACCCAGACCGTTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCAATTGCTTAAGAGTATTAGTCGAAGAAAACCTGCCCATGGTCATACTCAACAACAGGCTCAGCAACCGCATGGACAGAGTTCATCAGTTGGGGCATGTGTAGAAGTCGGAAAATTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTTCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAAACCACCGACAGCCAGCTGCAAACAATGGTTCAGCGGCTTCAAGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCCAAGGCCGTCCAAAGCCCTGGTTTCTTTGCTCAGTTTGTGCAACAGCAAAATGACAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTCGGCTCAAGCAGGATGGTATTGCTGAAACAACAGAGCAAGCTACCCCTCCTGATGGACAAATTGTTAAATATCAACCTATGATGAATGATACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGATACTCCTCGTGTAGAATCTTTCAATAAAAACCCTGATAATTACTTGATTGGCGATGGTACTTCACCATCCAGTGCAATGGACAGTAATAGCTCTACAAGCTGGAACTCTGGAGTAACTCTTCAAGAGGTTCCTCCATCTTCAGTGCAGTCTACTCAATTTCCAGTGGCAACAGGGACTCAAGGACACATCCCCTCATCAGAAAAACCTGAAATTCTATCTGTACCTCAAGCTGCAGCATCTGCAAATGTTATGAAGGATGGAACACATGCAGCATCGACTATCCCGACTTCTCAAGCAGATGTTATAATGCCTGATATACCTTCAGTACCAGAGATTGTGCCAAAAAGTATTCTTGATATACCTGAAAACGATTATATGGCTCCCGAGACAGATGATGGATTTATGGATCCGAGTTCACTTGGATCATTACCCATTGATTTGGATTGTCTTTCACCCGGTGCAGACATTGATGATTTGTTAAGCAGTTCTATTTGGGATGATCTTCTGCAAACTCCAATTCCAGAGGATTTTGAGGCCAACATAGACGAGATATCCAGAGGGAATGAGGTGCAGCCAACAGAAAATGGATGGGACAATAATACTCAACCCCTGGATCAACTAACAGAGCAGATGGGTCTTCTTTCTTCTGATGCCAAAAGAATTTAA 1509 0.4513 MDGASGGSGGGEGSATQIPAPTPMQNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSISRRKPAHGHTQQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDSQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNDSNRRITEVNKKRRLKQDGIAETTEQATPPDGQIVKYQPMMNDTAKAMLRKIMKWDTPRVESFNKNPDNYLIGDGTSPSSAMDSNSSTSWNSGVTLQEVPPSSVQSTQFPVATGTQGHIPSSEKPEILSVPQAAASANVMKDGTHAASTIPTSQADVIMPDIPSVPEIVPKSILDIPENDYMAPETDDGFMDPSSLGSLPIDLDCLSPGADIDDLLSSSIWDDLLQTPIPEDFEANIDEISRGNEVQPTENGWDNNTQPLDQLTEQMGLLSSDAKRI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1222 502 MobiDBLite consensus disorder prediction 294 323 - -
Mtr5g1222 502 MobiDBLite consensus disorder prediction 125 142 - -
Mtr5g1222 502 Gene3D - 25 123 IPR036388 -
Mtr5g1222 502 Coils Coil 151 178 - -
Mtr5g1222 502 SUPERFAMILY "Winged helix" DNA-binding domain 28 122 IPR036390 -
Mtr5g1222 502 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g1222 502 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 7 487 - -
Mtr5g1222 502 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g1222 502 MobiDBLite consensus disorder prediction 1 32 - -
Mtr5g1222 502 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g1222 502 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g1222 502 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g1222 502 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g1222 502 MobiDBLite consensus disorder prediction 121 142 - -
Mtr5g1222 502 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 487 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1222 Mtr-Chr5 12522084 12526883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1222 9 496 HSF AT1G32330 53.635 6.66e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr5g1222 HSF_DNA-bind 1.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1222 K09419 - gmx:100794897 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1222 5 12522084 12526883 Mtr5g1222 5 12522084 12526883 ECH