Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1219 ATGAGTTTTCAAGACTTAGAATCCGGCCGGCGAAACCTAATCAACGGCAAACAAAACCCGACGCAAGCGGTTGCTTCCGGCGTATTTCAGATCAACACCGCCGTCTCCACTTTTCAGAGACTCGTTAACACTCTCGGAACTCCTAAAGACACGCCCGAACTCCGAGAGAAACTGCACAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACTTCGGATAAACTTAAACAAGCTAGTGAAATTGATCATCATGCTGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTGGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAGACAGCTTACACTCCATTTGTTCCGCATGAAGATCAGCCATCCAGCTATACAGGCAGTGAAGTAGGTGTTAGTTCCGATAAAAGTCAAGAACGGCATGCCTTTCTTTTGGAATCCAGAAGACAGGAGGTAATATCCTTAGATAATGAGATTTCCTTCAATGAGGCTATCATCGAGGAAAGAGAACAAGGCATTCAAGAAATCCAGCAGCAGATAGGTGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGTCCAACATTGAGAATTCTCATGAAGCCACTGCCCAGGCGAAATCGCAACTTGTTCAAGCTTCAAAGACACAAAGATCAAGTTCATCTTTGGCGTGCTTGCTTATGGTGATATTTGGAGTCGTGCTTCTCATCATCATCATTGTTGTTGCTGCTTAG 807 0.4349 MSFQDLESGRRNLINGKQNPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHADVNATKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPHEDQPSSYTGSEVGVSSDKSQERHAFLLESRRQEVISLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHEATAQAKSQLVQASKTQRSSSSLACLLMVIFGVVLLIIIIVVAA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1219 268 CDD SynN 18 128 IPR006011 GO:0016020
Mtr5g1219 268 Pfam SNARE domain 212 263 IPR000727 -
Mtr5g1219 268 Gene3D - 15 128 - -
Mtr5g1219 268 PANTHER SYNTAXIN OF PLANTS PROTEIN 8 267 - -
Mtr5g1219 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Mtr5g1219 268 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Mtr5g1219 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mtr5g1219 268 Gene3D - 168 268 - -
Mtr5g1219 268 PANTHER SYNTAXIN 8 267 IPR045242 -
Mtr5g1219 268 SUPERFAMILY t-snare proteins 17 230 IPR010989 GO:0016020|GO:0016192
Mtr5g1219 268 SMART SynN_4 8 122 IPR006011 GO:0016020
Mtr5g1219 268 CDD SNARE_Qa 178 236 - -
Mtr5g1219 268 SMART tSNARE_6 170 237 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1219 Mtr-Chr5 12506428 12510416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1219 1 256 SNARE and Associated Proteins AT5G46860 75.769 4.02e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1219 - K08488 gmx:547656 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1219 5 12506428 12510416 Mtr5g1219 5 12506428 12510416 ECH
Mtr5g1219 5 12506428 12510416 Mtr8g2033 8 30168387 30173598 PCT