Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1210 ATGGTAGAAGGAGGTAGAGTACGACTATCTGAGGAGGCTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAAGCCATTGCTGCCACTCAGACAAGTGCTGCTAACGTGATGAATAGAAGTGGAGGAGATGCTTTAAGAGGTTCACCTTCTTGTGGCACGAGATTGCATGGTAATCCAGATGTGTTTTTCAAGCGGAAGGTGGATAAGTTTGATACAAGCGATTTGGATTGGACTGATAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAAGATCCTTTGGTTTATTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTACCGGCTGGGGTTGTTTTAATGAAGGAGCAACCTGGATTCAAGTTTACAACCAGAGTGCAGCCTCTCCGCTTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTCATGAGTGGAAGAAATTATACATTCCGTGAATATGAGAAAATGGCAAACAAGGTTTTTGCACGAAGATATTGCAGCGTTGGATGTCTTCCTGCCACTTACTTGGAAAAGGAGTTTTGGCAGGAAATTGGTCGTGGGAAAATGGATACTGTTGAATATGCATGTGATGTTGATGGCAGTGCTTTTTCAACTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCCCGGTTGCCCAAATCAACTTTGCGTCTATTGGAAACGTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCATGGCATGTGGAGGATCATTATTTGTACAGCATTAACTATCAGCACTGTGGAGCATCAAAAACTTGGTATGGTATCCCTGGTCACGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTATTCTACTGATATTTTGTCAAGTGATGGAGAAGATGGAGCCTTTGATGTTCTCTTGGGGAAAACAACTTTATTTCCACCTAATATTTTGATGGAGCATAAAGTCCCTGTCTATAAGGCTGTTCAAAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCACTTGGTGATTGGTTTCCTCTTGGGGCTATTGCAAGCAGGAGATATGCACTTCTTAACAGGGTACCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCGATGCTTATTCATTCAAGCTTGGAGCTTGAAGATTCAGACTTTCCCTCTTCAGACTTGTTATCTCATCATAGAACAAAGATATCTTTCATTAATTTGTTGCGTTTCCAGCATTGTGCTAGTTGGTTACTAATGAAATCAAGGGCGTGTATTAGTGTTTCTTCTCATTCGCATGGCACAATTCTCTGTAGCCTGTGCAAACGTGACTGTTATGTAGCTTATGTTGACTGCAGCTGTCATATGCATCCTGTATGCTTACGCCATGATGTTAAATCTCTTGACTTCATCTGTGGGAGCAAACACACTCTTTATCTGAGAGAGGATATTGCGGATATGGAAGCTGCGGCAAAGATGTTTGAGCAGGAAGATGGGATATTGGATGAGATAAGCAAGCAATCCAAAAGTGACCAAAATATGTATTCACATCCTTTGTCAGATATGTTTCAGAGAGCTGAAGCAAATGGATATGAACCTTATTGCGAGCTTAAACTTGATTCTATGATTGAATTTTATACAACTCCAGGACTGTCAACAAATAATCCAGAGTGTGGTACACAAAATCAATTTGTTTTGGGGCATTGCTCAGAAATTCCTAAACCAGAAGTGTCCGACGTTTCCTTTTCTGCTGCATCCACTCTTTGTTCTCTATCAGAACCTCATGACTGTTCCTCTGCTCCCAAAAATGCTGAGGGGCATTGTGAAGAACTTGGCGAAACAATATCCAACAGTGCATGCGAATCTTCTCTATCCCCTGCTTTGTATCATGAAAGCTCGGTTAAACTGCATGATCTACAGAAACCTGACATCAAGCCCATAGCAGATAACGACAGTGATGATTCTGATTCAGGAATATTTAGGGTAAAGCGCCCTTCCTCTCTTAAAGCAGAGAAAAGAAATCTGAAGATCATGGCTTCAAAACATTCTGAGCAGCAGGGACTTAAACGTTTGAAGAAAGTCCTTCCTGAAGGAAAAAGCAACAGGCAGCAAATGAATTTCAGAACCAGTGAATCAAGTGATAAATATAACCCTGTTAATGATAAAGTTGATATCTCCTTGAAGAACAGATTTGCAAGGGGAAATGGCACTCCCATTTCAGCAAGATATAAAAAGTCAGGCAATGAGGAAATAAGTATGCATATGCAACAAGATCACCACCGAAGAGAGAGGTTGCAGCAAACTTATAGAGAAGCGCCTTCCATTGAGATTGGGCCAAAGCGACTCAAAGTCCGAGGCCCTTCATTTTTGGGCATAGAGAGCAGATTGAATTGA 2538 0.4133 MVEGGRVRLSEEARNGLEFLKRKRLQRAQAIAATQTSAANVMNRSGGDALRGSPSCGTRLHGNPDVFFKRKVDKFDTSDLDWTDKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEQPGFKFTTRVQPLRFAEWDTEDKVTFFMSGRNYTFREYEKMANKVFARRYCSVGCLPATYLEKEFWQEIGRGKMDTVEYACDVDGSAFSTSPTDQLGNSKWNLKKLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYSTDILSSDGEDGAFDVLLGKTTLFPPNILMEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHSSLELEDSDFPSSDLLSHHRTKISFINLLRFQHCASWLLMKSRACISVSSHSHGTILCSLCKRDCYVAYVDCSCHMHPVCLRHDVKSLDFICGSKHTLYLREDIADMEAAAKMFEQEDGILDEISKQSKSDQNMYSHPLSDMFQRAEANGYEPYCELKLDSMIEFYTTPGLSTNNPECGTQNQFVLGHCSEIPKPEVSDVSFSAASTLCSLSEPHDCSSAPKNAEGHCEELGETISNSACESSLSPALYHESSVKLHDLQKPDIKPIADNDSDDSDSGIFRVKRPSSLKAEKRNLKIMASKHSEQQGLKRLKKVLPEGKSNRQQMNFRTSESSDKYNPVNDKVDISLKNRFARGNGTPISARYKKSGNEEISMHMQQDHHRRERLQQTYREAPSIEIGPKRLKVRGPSFLGIESRLN* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1210 845 MobiDBLite consensus disorder prediction 748 764 - -
Mtr5g1210 845 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Mtr5g1210 845 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Mtr5g1210 845 SMART JmjN_1 88 129 IPR003349 -
Mtr5g1210 845 PANTHER LYSINE-SPECIFIC DEMETHYLASE 56 841 - -
Mtr5g1210 845 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Mtr5g1210 845 SMART cupin_9 233 406 IPR003347 -
Mtr5g1210 845 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 56 841 - -
Mtr5g1210 845 MobiDBLite consensus disorder prediction 688 708 - -
Mtr5g1210 845 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Mtr5g1210 845 Pfam jmjN domain 90 122 IPR003349 -
Mtr5g1210 845 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Mtr5g1210 845 Gene3D Cupin 82 411 - -
Mtr5g1210 845 MobiDBLite consensus disorder prediction 748 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1210 Mtr-Chr5 12348324 12355414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1210 86 545 JUMONJI Transcription Factor Family AT2G34880 31.707 6.10e-63 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr5g1210 JmjC 1.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1210 - - gmx:100798611 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1210 5 12348324 12355414 Mtr5g1210 5 12348324 12355414 ECH