Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1209 ATGTATGGTGATTGTCAAGTTATGTCAACAATGGGAGGGAATGTAGTAGTAAACTCAGAATCTCTCTTCTCTTCTCCGATCCATAACTCTAACTTCAACTTCATGTCAACCATGCCTTTTCAACCATTTTCTTCTTCCATGAAAGAAGAAGAAGGAATTTTGAGAGGTAAAGAAGAGATAATGGATCAAAGTGGTTCAGGTAGTGAACAAGTTGAAGATAAATCAGGAAATGAACAAGAGATTAATAATGAACAACAAGCTACAAAGAAGAAACGTTATCATCGACACACTGCTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGATAAACAAAGACTGAAACTAAGCCATGATTTGGGACTGAAACCACGCCAGGTTAAGTTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCTGATAATGTGATACTTAGAGCAGAGAATGAGAGTTTGAAGAATGAGAACTATAGGCTACAATCGGCGTTACGTAATATTTTATGTCCTAATTGTGGTGGGCCATGTATAATGGGACCTGATATGGGTTTTGATGATCACCAACTTCGATTTGAAAATGCCCGGTTAAAAGAGGAGCTAGAACGTGTGTGCTGTATAACATCAAGATACACTGGTCGTCCACTCCAAACAATGGCACCACCTTCATCTCTTATGCCACCATCACTGGACTTAGACATGAACATTTATCCAAGGCACTTTGATCCAATGCCACCATGCACTGAAATGATTCCTGTCCCTATGTTACCACCTGAACCTTCACAATTTCAAGAGGGAGGTCTCTTATTAATGGAAGATGAAAAATCACTTGCTATGGAACTTGCAGCTTCTTCTATGGCTGAGCTTGTTAAGATGTGTCAAATGAATGAACCACTTTGGATTCGTAGCGAGAATGATAGAGAAGTTCTTAATTTTGATGAGCATGCTAGGGTTTTTCAATGGCCTTTGAATCTTAAGCAAAGGAATGAGTTAAGGAATGAAGCTACGCGTGATTCTGCTGTTGTAATCATGAATAGTGTTACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGAATTGTTTCCAACAATTGTTGCTAGAGCAAGAACTGTTCAAATTATAGCTTCAGGTGCTTCTGGCCATGCAAGTGGGACTCTTCAGCTGATGCACGCAGAATTCCAAGTTCTTTCTCCGTTGGTGTCCACCAGAGAGACTCATTTTCTTCGATATTGTCAGCAAAATGCCGAGGAAGGAACCTGGGCCATTGTTGATTTTCCTGTTGATAGCTTCCAACAAAACTTTCACAATTCTTGTCCCAAATACTGCAGAAGGTCCTCTGGCTGTGTGATTCAAGACATGCCAAATGGCTATTCGAGGGTAACATGGGTTGAGCATGCAAAAGTTGTAGAGAAACCTGTCCATCAAATATTTAGTAACTATGTGTATAGTGGTATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAGAGGCAATGTGAAAGGGTTGCAAGCCTTATGGCTAGAAACATATCAGATCTTGGAGTGATACCTTCTCCGGAAGCGCGAAAGAGCTTGATGAAATTAGCAAACCGGATGATAAAAACTTTTAGCCTTAATATGACCACTTGTGGTGGACAATCATGGACTGCTATATCGGATTCACCAGAAGACACTGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGCCAACCTAGTGGAGTGATTCTCGCCGCAGTTTCAACCACTTGGCTTCCTTATACTCATACCAAAGTCTTTGATCTCCTTCGTGACGAACGCCACAGATCTCAGATGGATGCACTTTCTAATGGGAACTCATTAAATGAAGTGGCTCATATTGCTAACGGTTCACATCCGGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCAAGTAACTCATCTCAAAATGTAGAGCTAATGCTGCAAGAGAGTTGCACAGATCAATCAGGAAGCTTAGTAGTCTACACAACAGTCGATGTTGATTCGGTCCAACTAGCTATGAGTGGACAAGACCCTTCATGCATTGCACTTCTTCCACAAGGGTTCATGATAGTGCCAATGGTTTCATCAAATGCTGATACATCATCTGAACAAGGTGTCACAGGAACACCATCATCTACTGCTAGTGCCAATGCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTTCTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCACCTCTGCAATACCCTTCATCAAATTGAAAGTGCTCTTTGTAGCAGCAGTAACAACAATTGCTTTGTTGGTTCTTGCAATGAACCAACCACTAGTGCACCTTCCAAGTAG 2406 0.4131 MYGDCQVMSTMGGNVVVNSESLFSSPIHNSNFNFMSTMPFQPFSSSMKEEEGILRGKEEIMDQSGSGSEQVEDKSGNEQEINNEQQATKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENESLKNENYRLQSALRNILCPNCGGPCIMGPDMGFDDHQLRFENARLKEELERVCCITSRYTGRPLQTMAPPSSLMPPSLDLDMNIYPRHFDPMPPCTEMIPVPMLPPEPSQFQEGGLLLMEDEKSLAMELAASSMAELVKMCQMNEPLWIRSENDREVLNFDEHARVFQWPLNLKQRNELRNEATRDSAVVIMNSVTLVDAFLDAQKWMELFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFQQNFHNSCPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVVEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKSLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPSGVILAAVSTTWLPYTHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTVDVDSVQLAMSGQDPSCIALLPQGFMIVPMVSSNADTSSEQGVTGTPSSTASANAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIESALCSSSNNNCFVGSCNEPTTSAPSK* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1209 801 PANTHER - 75 785 - -
Mtr5g1209 801 SMART START_1 289 513 IPR002913 GO:0008289
Mtr5g1209 801 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Mtr5g1209 801 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 75 785 IPR042160 -
Mtr5g1209 801 Coils Coil 146 166 - -
Mtr5g1209 801 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Mtr5g1209 801 SUPERFAMILY Bet v1-like 541 776 - -
Mtr5g1209 801 CDD homeodomain 90 148 IPR001356 GO:0003677
Mtr5g1209 801 MobiDBLite consensus disorder prediction 73 88 - -
Mtr5g1209 801 MobiDBLite consensus disorder prediction 60 96 - -
Mtr5g1209 801 CDD START_ArGLABRA2_like 284 512 - -
Mtr5g1209 801 Gene3D - 74 158 - -
Mtr5g1209 801 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Mtr5g1209 801 ProSiteProfiles START domain profile. 280 516 IPR002913 GO:0008289
Mtr5g1209 801 SUPERFAMILY Bet v1-like 282 515 - -
Mtr5g1209 801 SUPERFAMILY Homeodomain-like 78 148 IPR009057 -
Mtr5g1209 801 SMART HOX_1 88 151 IPR001356 GO:0003677
Mtr5g1209 801 Gene3D - 289 497 IPR023393 -
Mtr5g1209 801 Pfam START domain 290 513 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1209 Mtr-Chr5 12317226 12324304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1209 8 781 Homeobox Transcription Factor Family AT5G46880 55.995 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr5g1209 START 1e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1209 - - cam:101514650 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1209 5 12317226 12324304 Mtr5g1209 5 12317226 12324304 ECH
Mtr5g1209 5 12317226 12324304 Mtr1g3783 1 49388050 49393256 ECH
Mtr5g1209 5 12317226 12324304 Mtr6g1472 6 24564993 24570202 ECH