Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1163 ATGGCTCGCAAAAACGACGCCGTTTTATCCACCGAACCAGAACAAGCCCTTAACAACAACACCGAACTCAAATCCTCCAAGAAGAAGACCAAAAAGAACAAACACGAAGAAACCACTCCCAAAAGAAAGCACCAAGACGAAACCAATCTTCAAAACGACACCGAATCAGAGAAGAAAAGTAAGAAGAAGAAAAAGCATAACAAATCAGAGGAAAATAACGACGCTGGTGGTGTGTCGGTTTCTGCGTCGGATGAACCGATTGTGGTGACAGGGAAGAATGCCGGAGATGAGAAATACACGCCGGTTAAGAGGTTTGAGGATTCGGGGCTACCGGAGAATGTGCTTGAGTGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGTGCTTGGCCGTTTTTGTTGGATGGTCGTGATTTGATTGGAATTGCGGCTACTGGGTCAGGGAAGACACTTGCTTTTGGAATACCAGCTATTATGCATGTTATGAATAAGCGGAAGAGTAAGGGTTCGTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACGAGAGAGCTAGCTCAACAAATATCAGATGTATTGTGTGATGCTGGTAAATCTTGTGGCGTGGAATCAGTTTGTTTGTATGGTGGAACCCCCAAAGGAGCACAAATCTCTGCACTAAAATCTGGCATTGATATTGTCATTGGAACCCCCGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGTTCTATACTTGGTCAGACATGTTCTGCTCGTCAAATGGTTATGTTCAGTGCCACATGGCCGTTAGCAGTTCATCACTTGGCTCAGGAATTTATGGATCCCAACCCTGTAAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTATTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTACTAGAAAAATACCACAAATCTCAAAAGAATCGAGTACTTGTTTTTGTTTTGTACAAATGGGAAACCACACGGGTGGAGAAAATGCTTCAACAAGGGGGTTGGAAAGCAGTGTCAATAAGTGGTGACAAATCACAGCATGAGCGCACAAAGGCACTATCATTATTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCGGCACGAGGATTAGATATTCCAGATGTTGAAGTAGTGATCAACTTTAGTTTTCCTCTAACTCTAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACATCTGAATAAGGGACTTGCTGGGGAGCTTGTGAACGTTTTGAGAGAAGCAGGACAAGTTGTTCCAGACGATCTTTTGAAATTTGGCACACATGTTAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTCCTGTTGATGCTCCAAAGTCTAAAAAAATAACATTTGACAACTCTGACGATGAAGACTAA 1572 0.4319 MARKNDAVLSTEPEQALNNNTELKSSKKKTKKNKHEETTPKRKHQDETNLQNDTESEKKSKKKKKHNKSEENNDAGGVSVSASDEPIVVTGKNAGDEKYTPVKRFEDSGLPENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTPKGAQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSKKITFDNSDDED* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1163 523 Pfam DEAD/DEAH box helicase 126 295 IPR011545 GO:0003676|GO:0005524
Mtr5g1163 523 CDD DEADc 119 311 - -
Mtr5g1163 523 Pfam Helicase conserved C-terminal domain 339 447 IPR001650 -
Mtr5g1163 523 SMART ultradead3 120 327 IPR014001 -
Mtr5g1163 523 PANTHER BNAA08G07020D PROTEIN 27 509 - -
Mtr5g1163 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 458 IPR027417 -
Mtr5g1163 523 MobiDBLite consensus disorder prediction 39 60 - -
Mtr5g1163 523 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 129 IPR014014 GO:0003724
Mtr5g1163 523 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 256 264 IPR000629 -
Mtr5g1163 523 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 486 IPR001650 -
Mtr5g1163 523 SMART helicmild6 366 447 IPR001650 -
Mtr5g1163 523 Gene3D - 49 313 IPR027417 -
Mtr5g1163 523 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 509 - -
Mtr5g1163 523 CDD SF2_C_DEAD 324 456 - -
Mtr5g1163 523 Gene3D - 314 489 IPR027417 -
Mtr5g1163 523 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 310 IPR014001 -
Mtr5g1163 523 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1163 Mtr-Chr5 11658456 11664149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1163 101 455 Eukaryotic Initiation Factors Gene Family AT3G19760 33.053 1.23e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1163 K14811 - gmx:100305353 788.104