Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1157 ATGGAAGGAAGAAAAGTGCAACAATTACCTCATCATATTGATTTAAATGAGCGGACTTCAATTCAAGATCCCTCTGAGAATAGCATGGAACAACAAGAGAATCTCGACACTGATGTCATTGAGTCGGGTCATGCTGCCGCAATTCTAAACCCTAATGATAATAACTCAGTTCAAGCTGAGTCAGTACCTGAAGGAAGTAATGAAGCTAACTTAGTTCAAGCTGAGTCAGTGCCAGAAGGAAGTCATGAAGCAAAGAGAGGGCGTAGGGAAAGGGTACATTGGACGGAAGGTGAACACAAGTTGTTTCTGGAGGGGATAGAAAAATATGGCAAGGGACGTTGGAAAGATATTTCAAAAGAATTTGTGGTAACAAAGACTCCAATTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATAGAGAAGAGGAAAAAGAGAAGAAGCATACATGACACAACCTTAAACAAGAATGGCACACTAGTCACTCTCGCTGTTGAACAAGATGAGATTCCTTCAGTCGAGCAACAAAGTGAGACTCCTCCTCAAGGAATGCAACAGACACAAACACAACAAAATGAGATTTCTCCTATGTTGTGCTTGCTTTTTTCAATCGGTTCTACAATTCCTGATAAAGAGAAACTTGAGAAGATGCGCGACTTATTGGCAAAAGAACTTCGACGCTAG 702 0.4046 MEGRKVQQLPHHIDLNERTSIQDPSENSMEQQENLDTDVIESGHAAAILNPNDNNSVQAESVPEGSNEANLVQAESVPEGSHEAKRGRRERVHWTEGEHKLFLEGIEKYGKGRWKDISKEFVVTKTPIQIASHAQKYFIHQNVKDIEKRKKRRSIHDTTLNKNGTLVTLAVEQDEIPSVEQQSETPPQGMQQTQTQQNEISPMLCLLFSIGSTIPDKEKLEKMRDLLAKELRR* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1157 233 MobiDBLite consensus disorder prediction 177 196 - -
Mtr5g1157 233 CDD SANT 94 138 IPR001005 -
Mtr5g1157 233 Gene3D - 93 142 - -
Mtr5g1157 233 SUPERFAMILY Homeodomain-like 88 142 IPR009057 -
Mtr5g1157 233 MobiDBLite consensus disorder prediction 49 91 - -
Mtr5g1157 233 MobiDBLite consensus disorder prediction 1 33 - -
Mtr5g1157 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 142 IPR017930 -
Mtr5g1157 233 SMART sant 90 140 IPR001005 -
Mtr5g1157 233 PANTHER TRANSCRIPTION FACTOR KUA1 6 204 - -
Mtr5g1157 233 MobiDBLite consensus disorder prediction 1 19 - -
Mtr5g1157 233 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Mtr5g1157 233 PANTHER TRANSCRIPTION FACTOR SRM1 6 204 - -
Mtr5g1157 233 MobiDBLite consensus disorder prediction 49 74 - -
Mtr5g1157 233 ProSiteProfiles SANT domain profile. 94 142 IPR017884 -
Mtr5g1157 233 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Mtr5g1157 233 Pfam Myb-like DNA-binding domain 91 138 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1157 Mtr-Chr5 11523443 11524555 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g1157 Myb_DNA-binding 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1157 - - mtr:MTR_5g088060 265.003