Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1154 ATGGCTACAAACTGGAATTTTTTTTCTATCCCCAACAGCACTATCACTTACCCTCATTGGTATTCACCAAAACCTGGAATTTACAGCAGTTTACAGTCTCCTAGGAACCTTCCAACAGACCCTTTTCTCGATGTTGTTTCCTTCATTTTTTCTCACCCTCATGACGGGGTTTTAGCCCTTATTGATTCCTCATCTGGGACTTCCATTTCTTACTCAAATTTGTTAACTTTAGTCAAATCCTTGGCTTCTGGTCTTCATAAAATGGGTGTTTCACAAGGTGATGTTGTTTTGCTTTTACTTCCAAATTCAATTTACTATCCTATTGTACTATTGAGTGTTATGTATCTAGGTGCTGTTGTTACACCATTGAATCCTTTTAGTAGTGTTGGCGAAATTCGTAAGCAGGTTAAGGAGTGTCGTGTGAGCTTTTCTTTTACTATACCTGAAAATATCAAGAAGCTAGAGTCATTAGGCATTCCTGTTATTGCTGTGCCAGAAAATGAAATGGATTTGAAGCATGATTGTTTCTCATGTTTTTATAACCTTACTTATGGTAAATTCTATTCAATAAAGAAAAACCTTATTTATGGTGACTTTGATTTGCCTCAAAGGCCGGTTATTAAACAAGAAGACACTGCTGGTATATTATATTCTTCTGGTACTACAGGTGTGAGCAAAGGAGTTGTTTTAACTCATAGAAATCTTATTGCTATGGTTGAGCTTTTTGTGAGGTTTGAAGCTTCTCAATATGATTACTCTAGTTCCAAGACTGTGCATCTAGCTGTTTTGCCTATGTTCCATTTATATGGTTTAGCGCTCTTTGCTACCGGATTATTGTCACTGGGTTCTACAATCGTTGTAATAAGGAAATATGACATTGATGAGGCTATTAGGGCGATTGATAAATATAAAGTTACACACTTTCATGTCGTTCCAATGATGTTGTCGGCATTGACAGCGAAGGCAAAGGATGGTAATGGAAGTAAGTTGCAGAGTTTAAGACATGTCTCTTGCGGTGCAGAGCCTTTGAGCAAAGGAGCTATAAAAGATTTTGTCCAAGCTTTCCCTAATGTTGATTTTATACAGGGTTATGGAATGACTGAGTCGGGCGCAGTAGGAACACGCGGCTTCAATACTGATAAGTTTCACAACTATTCCTCACTAGGGTTGTTAGCTCCAAACATAGAGGCAAAAGTGGTAGATTGGAAAAGTGGTACATTTTTGCCCCCAGGCCTCAGCGGTGAGCTTTGGTTGAGAGGGCCTTCAATTATGAAAGGATACTTGAATAATGAGGAAGCTACAATGTCAACAATTGATAAAGATGGTTGGATACATACTGGAGATATTGTTTATTTTGATCAAGATGGATATTTATATATGTCTGGCCGTTTGAAAGACATTATAAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCTTTGTTAATTTCGCATCCTGAAATAGTTGATGCCGCCGTTACAGCTGGCAAGGTTGATGTAGCTGGGGAGATTCCAGTGGCATTTGTGGTCAAGAAAGTCGGAAGTGTACTTTCTTCACAGCATGTGATCGATTACGTTGCTAAGCAGGTTGCTCCATACAAAAAGGTTCGGAAAGTGGTCTTCACAGACAAGATACCGAGATCTGCGACTGGGAAAATCCTCCGAAAGGAACTCAGGAATTGCTTGACTTCTAAGCTCTGA 1707 0.3907 MATNWNFFSIPNSTITYPHWYSPKPGIYSSLQSPRNLPTDPFLDVVSFIFSHPHDGVLALIDSSSGTSISYSNLLTLVKSLASGLHKMGVSQGDVVLLLLPNSIYYPIVLLSVMYLGAVVTPLNPFSSVGEIRKQVKECRVSFSFTIPENIKKLESLGIPVIAVPENEMDLKHDCFSCFYNLTYGKFYSIKKNLIYGDFDLPQRPVIKQEDTAGILYSSGTTGVSKGVVLTHRNLIAMVELFVRFEASQYDYSSSKTVHLAVLPMFHLYGLALFATGLLSLGSTIVVIRKYDIDEAIRAIDKYKVTHFHVVPMMLSALTAKAKDGNGSKLQSLRHVSCGAEPLSKGAIKDFVQAFPNVDFIQGYGMTESGAVGTRGFNTDKFHNYSSLGLLAPNIEAKVVDWKSGTFLPPGLSGELWLRGPSIMKGYLNNEEATMSTIDKDGWIHTGDIVYFDQDGYLYMSGRLKDIIKYKGFQIAPADLEALLISHPEIVDAAVTAGKVDVAGEIPVAFVVKKVGSVLSSQHVIDYVAKQVAPYKKVRKVVFTDKIPRSATGKILRKELRNCLTSKL* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1154 568 Pfam AMP-binding enzyme 57 470 IPR000873 -
Mtr5g1154 568 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 567 - -
Mtr5g1154 568 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 14 567 - -
Mtr5g1154 568 Gene3D - 466 566 IPR045851 -
Mtr5g1154 568 ProSitePatterns Putative AMP-binding domain signature. 215 226 IPR020845 -
Mtr5g1154 568 SUPERFAMILY Acetyl-CoA synthetase-like 36 565 - -
Mtr5g1154 568 Gene3D - 37 465 IPR042099 -
Mtr5g1154 568 CDD 4CL 37 560 - -
Mtr5g1154 568 Pfam AMP-binding enzyme C-terminal domain 480 554 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1154 Mtr-Chr5 11483245 11487223 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1154 18 568 Monolignol Biosynthesis Gene Families AT4G19010 59.058 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1154 K01904 - gmx:100804808 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1154 5 11483245 11487223 Mtr5g1154 5 11483245 11487223 ECH