Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1149 ATGATGGAAAGTGGAGGGAGAGGAGGAATTGAAGGGTATGATGGAATGATGATGACGATGACGAGAGACCCAAAGCCGAGGCTGAGGTGGACAACCGATCTTCATGACCGTTTTGTCGACGCTGTCACAAAGCTTGGTGGCCCTGATAAGGCGACTCCCAAGTCTGTTCTAAGGTTAATGGGATTAAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAACATGCTCGAAAACAAAATGAAGAACAATTCAAAGAGAATAATAGATGTTCGTATGTAAATTTCAGTAACCATTCTTCAGGGACTAATACCAACTACGGAGGTGATAATGAAGGGGGAGAAATCCAAATAGGAGAAGCACTAAGGCAACAAATTGAAGTTCAAAAGAGATTGGAAGAACAACTTGAGGTACAAAATAAATTGCAAATGAGAATAGAGGCTCAAGGAAAGTATTTGCAGGCAGTGTTAGAGAAAGCACAAACAAGCCTTCCTCAAGATGGACCAGGCAATCTTGATGCATCAAAAGCTCAATTGGCTGAATTCAACTCAGCTTTGACAAATTTCATGGAAAATATGAATAAAGATAGTAAAGAAAACATACTAGACATGAATGAATTCCATAATAAGAATCATGCTCAAGCTTTCAATTATCAAGAAGTAATAGGGACAGAAGAACATAAGGAACTAAAGCCTCAAGTTGAAGGGGGTGCAGTACAGCTAGACTTAAACATTAAAGGTGGCAATGAACATCTTGTATCTGCAGATGGAGCTGAAATGGAATCAAATATGGTTTCATATAGGGCAAAGGTAAGAAAGTTTGAGGAAGGAATGCTTAAAAGTTCAGCAAGGCATCTTCTAATTAATTAA 888 0.384 MMESGGRGGIEGYDGMMMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQHARKQNEEQFKENNRCSYVNFSNHSSGTNTNYGGDNEGGEIQIGEALRQQIEVQKRLEEQLEVQNKLQMRIEAQGKYLQAVLEKAQTSLPQDGPGNLDASKAQLAEFNSALTNFMENMNKDSKENILDMNEFHNKNHAQAFNYQEVIGTEEHKELKPQVEGGAVQLDLNIKGGNEHLVSADGAEMESNMVSYRAKVRKFEEGMLKSSARHLLIN* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1149 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 258 IPR044848 GO:0003700
Mtr5g1149 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 258 - -
Mtr5g1149 295 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 25 80 IPR006447 GO:0003677
Mtr5g1149 295 Pfam MYB-CC type transfactor, LHEQLE motif 122 168 IPR025756 -
Mtr5g1149 295 Gene3D - 24 82 - -
Mtr5g1149 295 SUPERFAMILY Homeodomain-like 25 81 IPR009057 -
Mtr5g1149 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 82 IPR017930 -
Mtr5g1149 295 Pfam Myb-like DNA-binding domain 28 78 IPR001005 -
Mtr5g1149 295 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1149 Mtr-Chr5 11436881 11440716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1149 17 194 G2-like Transcription Factor Family AT4G13640 49.730 3.73e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr5g1149 Myb_DNA-binding 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1149 - - gmx:100819756 409.068