Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1147 ATGGCAGTTTCGGGAGTTTATCAGGGTGATGTTGTCTACAATTGTGTTGCAACAGTTGATGACATCCTGCTAAAAAATGGATTGTATTATGTTTCTTGCCCTCATTGTAGGAAAACTGTGAGTTCCACTGAGACAGACTTCAATTGTGAGCATTGTACTAAAAAGGTCGACTATCCAAAGATTAGGTACCGTTTGGAACTTCAAGTCAACGACTCTACGGAATCAACAATATTTGTGTTGTTTGCCGAAGTTGCTGAACAATTGGCACAACTAAAGCTAGATGACCTCACCCCGGATTTAGAAAATCAGACTGGACGTGACTCTGATCTGCCTAAACAGCTCCAGCATATCATTGGTTCAAAGCATATTTTTCAAGTTAAGCTGAGCTCTTACTTTGAACGTCGTGGAGTACAAAGCTTCACTGCACATAAGATTCTGAAGCCAGTTGTTAAGATTGAGAAAGAAGACAACATTGCCACTGCGTGTTCTTCCTCAAGTGGATCTCTTACCATTGAAATACCAGATTTGCCGAAGAAGAGGAGAAAATTAATATTGCACTCCAACAAATCAGGTGATAATGACCAGAATGAAGATGTGGAAGATTTAGAAGATTGA 615 0.3984 MAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKLSSYFERRGVQSFTAHKILKPVVKIEKEDNIATACSSSSGSLTIEIPDLPKKRRKLILHSNKSGDNDQNEDVEDLED* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1147 204 CDD RPA1_DBD_C 5 156 IPR013955 -
Mtr5g1147 204 PANTHER REPLICATION FACTOR A 1, RFA1 11 167 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr5g1147 204 MobiDBLite consensus disorder prediction 184 204 - -
Mtr5g1147 204 SUPERFAMILY Nucleic acid-binding proteins 8 129 IPR012340 -
Mtr5g1147 204 Gene3D - 4 161 IPR012340 -
Mtr5g1147 204 PANTHER BNAC01G35430D PROTEIN 11 167 - -
Mtr5g1147 204 Pfam Replication factor-A C terminal domain 14 129 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1147 Mtr-Chr5 11416417 11417571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1147 11 129 Core DNA Replication Machinery Family AT5G08020 28.333 5.61e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1147 - - mtr:MTR_4g070090 409.068