Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1133 ATGAGCATTCAACAACCGCCGTTGATGTGGTCTCCAACACATCCACCGTTCACTGTCTCTCAATGGCAAGAGCTAGAACATCAAGCTCTCATCTTCAAGTATCTCAAAGCTGGTTTATCTGTTCCTCCTGACCTCCTTTTACCTATTCGGAAAAGTCTTCAATTCATGTCTCATCCATCTCTGGGTTATTATGGAAAAAAAATTGACCCAGAACCAGGTAGGTGTAGAAGAACAGATGGTAAAAAATGGAGATGTGCTAGGGATGCTCATCCTGATTCTAAGTACTGTGACCGGCATATGATTCGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTTCTTCTTCTTCTTCTTGTTCACAATCTTCATCTTCAGTTTCAGCTACTACTTCACAAGGTGGTTCTAGTGGAAGTACTAGTACTGTTTCTGCTTCTGTTACTGCTACTTCAACTTTTCAAACACTTCCTTTGCATACAAATGGTACTCGTGAAGGTTTAAGTTTCAATCTTGGGAACACCGTGCCCCACATGGACCCTATGCTTCTTCCTCTTCAGGGTTCTAAGAAACCTTATAGGTTTGGACTGAACTCGGAAGCAGAGGAGAACAACCTCTTACAGAAAGATCTAGGATCTGTGAAGTATCAAGGTTATGACTTCACTTCAGATGGCATGTGGTATAATAACATGTCTCAGATTTCATCAAACACTGTTTCAGAATCAAGGAATGGTTCTTCCATGGTTGACAACTACAACTTCCAACAGCGAACAACAAGAGAACCTGAGCTGTTTAACCTCGACGCTGCAAGGTCCAAGGAAATCGTCTTTAACGGCCAGCTAGGTAGTTTGAAACAGGAATATCCATCCTCTCAGTCTCTCTTCAGTGACTGGCAGTGGAAGAAAGATTTAGCCTCCTCTGGTGTGGAGTATAGGCCAAGCAAGGATTTTAACACTAATCCAGATGTCAATGTTGATTGA 975 0.4246 MSIQQPPLMWSPTHPPFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQFMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCARDAHPDSKYCDRHMIRRRYRSRKPVESSSSSSCSQSSSSVSATTSQGGSSGSTSTVSASVTATSTFQTLPLHTNGTREGLSFNLGNTVPHMDPMLLPLQGSKKPYRFGLNSEAEENNLLQKDLGSVKYQGYDFTSDGMWYNNMSQISSNTVSESRNGSSMVDNYNFQQRTTREPELFNLDAARSKEIVFNGQLGSLKQEYPSSQSLFSDWQWKKDLASSGVEYRPSKDFNTNPDVNVD* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1133 324 PANTHER GROWTH-REGULATING FACTOR 1 324 - -
Mtr5g1133 324 Pfam WRC 70 112 IPR014977 -
Mtr5g1133 324 ProSiteProfiles QLQ domain profile. 16 51 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mtr5g1133 324 PANTHER - 1 324 IPR031137 GO:0005634|GO:0006351|GO:0032502
Mtr5g1133 324 MobiDBLite consensus disorder prediction 106 142 - -
Mtr5g1133 324 ProSiteProfiles WRC domain profile. 69 113 IPR014977 -
Mtr5g1133 324 MobiDBLite consensus disorder prediction 111 142 - -
Mtr5g1133 324 Pfam QLQ 16 50 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mtr5g1133 324 SMART QLQ_2 15 51 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1133 Mtr-Chr5 11229058 11232392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1133 15 112 GRF Transcription Factor Family AT3G13960 57.273 2.59e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Mtr5g1133 WRC 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1133 - - lja:Lj2g3v1537380.1 430.254