Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1125 ATGGCCGTGAATCTAACTCAGGGTGCGATAGTAACGATGTGTTTCACATCGGAAGATTTGCACCCGGTGTTACAAGTTATCGATTTGAAGCTTGTTCAGTCGCAGCAGAATAGTGGTACTGAGAGATACCGAGTCGTTCTCTCCGATGGTTTGCATTATCAACAAGGAATGCTCGCTACACAGAAGAATGAGTTGGTTCATTCTGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTTCTCAGTTCATCTGTAACGTTGTTCAGAATCGCAAAATTATCATCATAGTTGATTTGGATGTTATAATGGACAAATGTGACTTGATTGGAAAACCTGACCCGGCACCAAAAGAAGATCCTGCACAATCTGCTGTGAGTCATGCAGGAAATGTACAATCAGCTGCTGGTCATTTAGGAAGCAATGCTGGAAACTCACAGTATTTGAACAGTGGTTCCCATACAGGTGGTGGTGTTAATGTTAGACCAAATGTAGCTCTGCCATCTATGGATCGTCCGACCGTGAATCCTCCAGCTAGCGTTGTTTATTCTAACGGTTCTGGATCTGCAAGATACGGTGCATCTAATGCCCCTCCACCTTATCCTAAACCTGAGCCTGGAGTCAGTTTGAACAGACCAGCGTCAGTGAATGGGTCTTCTGGTGAACAGAATACAAGTTTCCGCAATCCACTATGTGAGACTTCAAGACCAGTGCAAAATTCTTATGTTCGCCCTCCTCAGCCTGTGAACCAACAGCCATCTCCTATGTACAACAGAGGGCCTACAGGAAGAAATGATGCTCCTCCAAGGATAATTCCCATATCTGCTTTGAATCCATATCAGAATATGTGGACAATTAAAGCCAGAGTAACAGCTAAGGGAGAACTTAGGACCTATACCAATTCCCGAGGTCAGGGAAAAGTATTTTCTTTTGATCTTTTGGATTCCGACCGTGGAGAAATACGGGCAACTTGCTTTAATACCGTGGCTGAACAGTTCTATAATGTAATTGAAGTTGGTAAAGTCTATCTGGTTTCCAGGGGAAGTCTGAAGCCAGCTCAGAAGAATTTTAATCACCTACCTAATGATCAAGAGATAACTCTTGATATCACATCAGTTATACAGCCATGCGTTGATGATAACTCAATTCTACAACAGATCTACAATTTCCGTCCCATTGGTGACATTGAAAATATGCAAAACAACAGCATTGTGGATGTGATTGCCGTGGTTACTTCTATCAGTCCTACAGCATCAATCATCAGAAAAAATGGCACTGAAACACAGAAGAGATCTCTGCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAATTAACTGTATGGGGGAGTTTTTGCAATACAGAAGGACAAAAGCTGCAAAATATTTGCGACTCTGGGGAATTTCCAATTTTGGTTGTAAAATCTGCCAGAGTAAATGATTTCAACGGGAAATCTATTGGGACCATTGCCACCAGCCAATTATTGGTAGAACCTGATTTTCCGGAGGCTTTTACACTGAGGGGATGGTTTGACCAGGAAGGGAGGAATGTTCCAAGTCAATCTATTTCCAGAGAATCATCTAGTTTTGGTAAAAGTGAAGTGCAGAAGACTATATCTCAAATTAAAGATGAAAACTTAGGGACTTCAGACAAGCCTGATTGGATATCTATATGTGCAAATGTTGTATTTTTTAAATATGATAATTTTTACTACACAGCTTGTCCTAACATGATAGGAGATAGGAAATGTAATAAAAAGGTTACCGACAATGGGGATAAGACATGGCACTGTGAAAGGTGTGATACGTCTCTTTCTTGTGATTATAGATACTTGCTGCAAATGCAGATACAAGATCACACTGGCATGACATGGGTTACTGCTTTTCAGGAAGGCGGCGAGGACATCATGGGTATGCCCGCAAAAGATTTGTTTTCTGTGAAATTTGAAGAAAAAGATGAAGAAAAATTTAAAGAAATCATTAGTAAGGTTGTCTTCACGAAATACATGTTCAAGTTAAAAGTAAAAGAGGAGACATTCAATGACGAAGCACGTGTTAAGTCAACTGTAGTGAAAGCAGAGAAGATTGTTAACTTTGCATCTGAATCTAAATCTCTTCTGGATTTGATTGATAAACTTAAGTCTGAGAAAGCAGAAGGTACCACTATTAACTCTGCTATCAACACAACTGGACCGGGGAGCCTTCCAATTGGACAAGCTACGCCACCAGTATATAATCCTATAAACAGCAACACTAATACTGGTAGAGATTATGGGACCCCAGCAAATCAAGTGAGTCAGTATGGAAACCAACATAACAGTTCTTTTGCTTCATCAGGTGCTCCTGGTTCATATATGTCATGCAGCAATTGTGGAGGCTCTGATCATAGCTCTGCACAATGCCTACATCTTAGAAATCCGCCTGAACAGACTGCTGGGGGGGCCTACGTCAACACGGTGTCTGGATCAGGTGGTGCTTCGGGTAAGTGCTATAAATGCCAACAACCTGGACATTGGGCGAGCAACTGTCCTAGTATGAGTGCCGCCAACAGGGTATCTGGTGGATCCGGTGGTGCTTCAGGTAATTGCTATAAATGCAACCAGCCTGGACATTGGGCGAACAACTGTCCCAATATGAGTGCAGCACCTCAATCTCATGGAAACAGTAATACAGGGCAAGGAAGATATGGTATTGCTCAAAATCAGCCGGATGGAAGATGTTGA 2715 0.4199 MAVNLTQGAIVTMCFTSEDLHPVLQVIDLKLVQSQQNSGTERYRVVLSDGLHYQQGMLATQKNELVHSGRLQKGSIVKLSQFICNVVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEDPAQSAVSHAGNVQSAAGHLGSNAGNSQYLNSGSHTGGGVNVRPNVALPSMDRPTVNPPASVVYSNGSGSARYGASNAPPPYPKPEPGVSLNRPASVNGSSGEQNTSFRNPLCETSRPVQNSYVRPPQPVNQQPSPMYNRGPTGRNDAPPRIIPISALNPYQNMWTIKARVTAKGELRTYTNSRGQGKVFSFDLLDSDRGEIRATCFNTVAEQFYNVIEVGKVYLVSRGSLKPAQKNFNHLPNDQEITLDITSVIQPCVDDNSILQQIYNFRPIGDIENMQNNSIVDVIAVVTSISPTASIIRKNGTETQKRSLQLKDMSGRSVELTVWGSFCNTEGQKLQNICDSGEFPILVVKSARVNDFNGKSIGTIATSQLLVEPDFPEAFTLRGWFDQEGRNVPSQSISRESSSFGKSEVQKTISQIKDENLGTSDKPDWISICANVVFFKYDNFYYTACPNMIGDRKCNKKVTDNGDKTWHCERCDTSLSCDYRYLLQMQIQDHTGMTWVTAFQEGGEDIMGMPAKDLFSVKFEEKDEEKFKEIISKVVFTKYMFKLKVKEETFNDEARVKSTVVKAEKIVNFASESKSLLDLIDKLKSEKAEGTTINSAINTTGPGSLPIGQATPPVYNPINSNTNTGRDYGTPANQVSQYGNQHNSSFASSGAPGSYMSCSNCGGSDHSSAQCLHLRNPPEQTAGGAYVNTVSGSGGASGKCYKCQQPGHWASNCPSMSAANRVSGGSGGASGNCYKCNQPGHWANNCPNMSAAPQSHGNSNTGQGRYGIAQNQPDGRC* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1125 904 SUPERFAMILY Nucleic acid-binding proteins 386 515 IPR012340 -
Mtr5g1125 904 Pfam OB-fold nucleic acid binding domain 282 370 IPR004365 GO:0003676
Mtr5g1125 904 Gene3D - 853 883 - -
Mtr5g1125 904 PANTHER REPLICATION FACTOR A 1, RFA1 3 749 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr5g1125 904 MobiDBLite consensus disorder prediction 176 190 - -
Mtr5g1125 904 CDD RPA1_DBD_B 402 509 - -
Mtr5g1125 904 SUPERFAMILY Retrovirus zinc finger-like domains 821 876 IPR036875 GO:0003676|GO:0008270
Mtr5g1125 904 MobiDBLite consensus disorder prediction 880 895 - -
Mtr5g1125 904 Gene3D - 268 378 IPR012340 -
Mtr5g1125 904 Pfam Replication protein A OB domain 391 494 IPR031657 -
Mtr5g1125 904 Pfam Zinc knuckle 859 875 IPR001878 GO:0003676|GO:0008270
Mtr5g1125 904 Pfam Zinc knuckle 825 842 IPR001878 GO:0003676|GO:0008270
Mtr5g1125 904 Gene3D - 380 518 IPR012340 -
Mtr5g1125 904 PANTHER REPLICATION PROTEIN A SUBUNIT 3 749 - -
Mtr5g1125 904 SMART c2hcfinal6 859 875 IPR001878 GO:0003676|GO:0008270
Mtr5g1125 904 SMART c2hcfinal6 826 842 IPR001878 GO:0003676|GO:0008270
Mtr5g1125 904 SMART c2hcfinal6 784 800 IPR001878 GO:0003676|GO:0008270
Mtr5g1125 904 MobiDBLite consensus disorder prediction 880 904 - -
Mtr5g1125 904 CDD RPA1N 8 91 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mtr5g1125 904 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Mtr5g1125 904 SUPERFAMILY Retrovirus zinc finger-like domains 778 841 IPR036875 GO:0003676|GO:0008270
Mtr5g1125 904 Pfam Replication factor-A C terminal domain 552 703 IPR013955 -
Mtr5g1125 904 SUPERFAMILY Nucleic acid-binding proteins 268 380 IPR012340 -
Mtr5g1125 904 CDD RPA1_DBD_C 536 709 IPR013955 -
Mtr5g1125 904 ProSiteProfiles Zinc finger CCHC-type profile. 826 842 IPR001878 GO:0003676|GO:0008270
Mtr5g1125 904 SUPERFAMILY Nucleic acid-binding proteins 534 710 IPR012340 -
Mtr5g1125 904 MobiDBLite consensus disorder prediction 124 156 - -
Mtr5g1125 904 ProSiteProfiles Zinc finger CCHC-type profile. 860 875 IPR001878 GO:0003676|GO:0008270
Mtr5g1125 904 CDD RPA1_DBD_A 271 374 - -
Mtr5g1125 904 MobiDBLite consensus disorder prediction 210 257 - -
Mtr5g1125 904 Gene3D - 782 852 - -
Mtr5g1125 904 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 247 709 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr5g1125 904 MobiDBLite consensus disorder prediction 112 265 - -
Mtr5g1125 904 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mtr5g1125 904 Gene3D - 3 114 IPR012340 -
Mtr5g1125 904 Gene3D - 519 710 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1125 Mtr-Chr5 11148712 11152670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1125 1 822 Core DNA Replication Machinery Family AT5G45400 49.828 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1125 K07466 - gmx:100778597 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1125 5 11148712 11152670 Mtr5g1125 5 11148712 11152670 ECH