Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1124 ATGGCTGTGAATCTGACACAAGGTGCGATAGTAAAGATGTGTTTCACATCGGAAGAATTGCACCCGGTGTTACAATTCATCGATTTGAAGCCTGTTCAGTCGCAGCAGAATAGTGCTATCGAGATATACCAACTCTTTCTCTCCGATGGTTTGCATTATGAACATGGAATGCTTGCTAAACAGAAGAATGAGTTGGTTCATAATGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTTACTCAGTTCATCTATAAACATGTTCGGACTCGCAAACTTCTCATTGTAGTTGATTTGGAAGTTATAATGGACAAATGTGACTTGATTGGAAAACCTGACCCGGCACCAAAAGAAGCACCTGCACTATCTGCTGCGAGTCATGCAGGAAATGTACAATCAGCTGCTGGTCAATTAGAAAGCACTGCTGAAAAAGCGGTTATGGCTGTGAATCTGACACAAGGTGCGATAATGAAGATGTGTTTCACATCGGAGGAAATCCAACCGGTTTTACAAGTTATCGATTTGAAGCTTTTGCAGTCGCAGCAAAATAGCACTACTAAAATGTACCAACTCGTTCTCTCCGATGGTTCACATTATAAACAAGGAACACTCTCTGTTCAGAAAAATAAGTTGATTCATTCTGGAAGGTTGCAGAAAGGTTCCATTGTTAAGCTCAATGAGATCATCTGTAACGATGTTAATCAGAATCTCAAAATTATCTTCTTTGTTGAGCTGGATGTTATACTTGACAAATGGGACTTGATTGGAAAACCTGTCCCGGCTCCAGAAGAAGCACTTGCAAAATCTGCTGCATATGTACAATTGCTTAATGCATCTTTGATTGGAAAACCTGTCACTGCACGAAAAGAAGCAACAGAACCAAAATTTGCAACTAAGGAAGATATTGAGAAGCAAGCTGAGAAGATAGACCAGTTCATTGAGATCTCTAACAAGCGGCATGAAGACGTGTTAGCAAGTCAAGCTCATATTCGGAACACCCTTGCCCAGATCTTAGCCAGACTTACCTAA 1026 0.4074 MAVNLTQGAIVKMCFTSEELHPVLQFIDLKPVQSQQNSAIEIYQLFLSDGLHYEHGMLAKQKNELVHNGRLQKGSIVKLTQFIYKHVRTRKLLIVVDLEVIMDKCDLIGKPDPAPKEAPALSAASHAGNVQSAAGQLESTAEKAVMAVNLTQGAIMKMCFTSEEIQPVLQVIDLKLLQSQQNSTTKMYQLVLSDGSHYKQGTLSVQKNKLIHSGRLQKGSIVKLNEIICNDVNQNLKIIFFVELDVILDKWDLIGKPVPAPEEALAKSAAYVQLLNASLIGKPVTARKEATEPKFATKEDIEKQAEKIDQFIEISNKRHEDVLASQAHIRNTLAQILARLT* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1124 341 CDD RPA1N 8 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mtr5g1124 341 PANTHER REPLICATION FACTOR A 1, RFA1 3 107 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr5g1124 341 PANTHER REPLICATION FACTOR A 1, RFA1 147 253 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr5g1124 341 Pfam Replication factor-A protein 1, N-terminal domain 150 247 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mtr5g1124 341 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mtr5g1124 341 Gene3D - 3 114 IPR012340 -
Mtr5g1124 341 Gene3D - 148 260 IPR012340 -
Mtr5g1124 341 PANTHER REPLICATION PROTEIN A SUBUNIT 147 253 - -
Mtr5g1124 341 PANTHER REPLICATION PROTEIN A SUBUNIT 3 107 - -
Mtr5g1124 341 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Mtr5g1124 341 SUPERFAMILY Nucleic acid-binding proteins 146 253 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1124 Mtr-Chr5 11140652 11143082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1124 146 257 Core DNA Replication Machinery Family AT5G45400 41.176 1.55e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1124 K07466 - gmx:100812465 268.855