Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1120 ATGGAGTCCTCCGGTGAGCATGAAAGGTTTTCGGTTAGAGAGGTTCATGCCAATGGAAGTCGCATGGCCGCATCAGAAGTTGAGGCTAAGCTTGATGAAGGAAATATTCAAGAAGCGGAATCTGCGTTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTCTTTGATGGGATCGATCTCCATGCTGCCATCCAACGGTTGCAACCCTCGTTTTCTGAAAAATCGCCTGTCAAAAAAGGTCGTACTCGCACAGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTACTTTGGTGCTTGAAGCTATCTACTTAAAAGCCAAGTCCCAACAAAAACTGGGGAAATTTGCTGAAGCTGCTAATGACTGTAAACGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGCATACCTGATTTTCAAGTGGATGGTAAACTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGGAGGTTGCTATGACGAGGCAATCTCTGCTTATCGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTTCAAGAATTCAGAAATCATTTGTTGTTTTTCTGCTGTATAGTGGTGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGGTTGATGGTTCTTATGTGCCTAAAAATAATCTCGAAGAGGCCATTTTGCTTTTAATGATTCTTATAAGAAAGTTTGGTCATGGTAAGATAAAATGGGATCCTTCAATCATGGAGCACCTAACTTTTGCACTTTCCGTATGTAGCCAAACTTCCGTTTTAGCAATGCAATTTGAAGACTTGATGCCTGGAGTATACCATCGTATCGATCGTTGGAATTCTTTAGCTTTATGTCATTGTGCTGCCGGACAAAATGTCAGTGCTTTGAATCTGCTAAGGAAGTCCTTGCACAAACACGAACGGCCAGATGACCTTACATCGTTATTATTAGCTGCTAAGATCTGCAGTGAGAATACCTGTCTTGCCGGTGAGGGAGTCGGCCATGCGCAGAGGGCAATCAAGAATGCTCATGGTCCAAATGAACATTTAAAGGGTGTTGCTCTTCGCATGTTGGGACTTTGTCTTGGAAAGCAAGCTAAAGTTGCTTCCTCTGACTTCGAGAGGTCTCGGTTTCAGTCCAAAGCTCTGGAGTCATTGGAGGAGGGAACTAGATTGGAGAAAAATAATTCTGATCTGATTTTTGAGTTGGCGGTTCAGTACGCTGAACACCGTAATCTGACCTCTGCTTTGCGGTCTGCGCGTCATTTCTTCAACGAAACTGGCGGCTCAGTAGTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCGGCACAACAAAGATTTCCAGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGTGAGATGGGAGCAGGGGCCTCTGCTTAAGCTTAAAGCGAAGCTGAAGATCTCCCAATCAAAACCGATGGATGCTATCGAAACCTATCGCTACCTTCTTGCATTGGTTCAAGCCCAGAGGAAATCCTTTGGGTCTTTCCAAATTAGTTCGAAGGTTGAAGATGATAAAGTTAATGAATTTGATATTTGGCATGGTCTTGCAAATTTATATGCTAGCCTTTCTCGTTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGGAGTACTCTGTAGAAATTTTGCGTACTGAAGGTATTTTGTTTGAAGGACACGGGCAAAATCAAGAAGCTCTCAACGCTGCTATTAATGCTATACTACTTGAACCAAACCATGTTCCAAGCAAAATCTTAATGAGTGCTTTGATTCATAAAATAGGCTCAAAAGCTTTGCCTGCTGCTGCGAGAAGCATGCTGTCTGATGCGCTTAGAATAGAACCGACCAATCCTATGGCTTGGTATTACTTGGGATTAATTCACAAGCACGATGGCCGAATGGGTGATGCTGCGGACTGCTTCCAGGCAGCTTCCATGCTGGAAGAATTTGATCCGATCGAAAGTTTCAGCACCATACTTTGA 2091 0.4376 MESSGEHERFSVREVHANGSRMAASEVEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLHAAIQRLQPSFSEKSPVKKGRTRTESPSSVSQHAATLVLEAIYLKAKSQQKLGKFAEAANDCKRILDAVEKIFYQGIPDFQVDGKLQEIVSHAVELLPELWKQGGCYDEAISAYRRALLSQWNLDNDCCSRIQKSFVVFLLYSGVEASPPSLAVQVDGSYVPKNNLEEAILLLMILIRKFGHGKIKWDPSIMEHLTFALSVCSQTSVLAMQFEDLMPGVYHRIDRWNSLALCHCAAGQNVSALNLLRKSLHKHERPDDLTSLLLAAKICSENTCLAGEGVGHAQRAIKNAHGPNEHLKGVALRMLGLCLGKQAKVASSDFERSRFQSKALESLEEGTRLEKNNSDLIFELAVQYAEHRNLTSALRSARHFFNETGGSVVKAWILLALILSAQQRFPEAEVVTDAALDQTVRWEQGPLLKLKAKLKISQSKPMDAIETYRYLLALVQAQRKSFGSFQISSKVEDDKVNEFDIWHGLANLYASLSRWKDAEICLQKARELKEYSVEILRTEGILFEGHGQNQEALNAAINAILLEPNHVPSKILMSALIHKIGSKALPAAARSMLSDALRIEPTNPMAWYYLGLIHKHDGRMGDAADCFQAASMLEEFDPIESFSTIL* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1120 696 SUPERFAMILY TPR-like 54 449 IPR011990 GO:0005515
Mtr5g1120 696 SUPERFAMILY TPR-like 497 681 IPR011990 GO:0005515
Mtr5g1120 696 SMART tpr_5 459 492 IPR019734 GO:0005515
Mtr5g1120 696 SMART tpr_5 549 582 IPR019734 GO:0005515
Mtr5g1120 696 SMART tpr_5 119 152 IPR019734 GO:0005515
Mtr5g1120 696 SMART tpr_5 583 616 IPR019734 GO:0005515
Mtr5g1120 696 SMART tpr_5 303 336 IPR019734 GO:0005515
Mtr5g1120 696 SMART tpr_5 654 687 IPR019734 GO:0005515
Mtr5g1120 696 Gene3D Tetratricopeptide repeat domain 631 691 IPR011990 GO:0005515
Mtr5g1120 696 Pfam Tetratricopeptide repeat 636 680 - -
Mtr5g1120 696 Gene3D Tetratricopeptide repeat domain 540 630 IPR011990 GO:0005515
Mtr5g1120 696 Gene3D Tetratricopeptide repeat domain 20 211 IPR011990 GO:0005515
Mtr5g1120 696 Gene3D Tetratricopeptide repeat domain 240 530 IPR011990 GO:0005515
Mtr5g1120 696 PANTHER PROTEIN NPG1 1 695 IPR043376 -
Mtr5g1120 696 PANTHER CALMODULIN-BINDING PROTEIN 1 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1120 Mtr-Chr5 11100437 11106406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1120 12 696 Calmodulin-binding Proteins AT2G43040 70.203 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1120 K21843 - gmx:100814609 1131.32