Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1115 ATGATAGGAAACAATAAGCTTTGTGGAGGTATTTCAGATTTGCATCTACCATCATGCCCTATCAAAGGTAGAAAACATGCAACAAACCATAATTTCAGGTTGGTATCAGTGATAGTTAGTGTGGTTTCTTTTCTTATCATACTTTCATTTATTATAATTATCACCTGGATGAAAAAAAGAAACCAAAAACCATCTTTTGATTCACCAACAATTGATCAACTAGATAAAGTTTCATACCAAGATTTACATCAAGGAACCGATGGATTCTCAGATAAAAACTTGATTGGATCAGGAGGTTTCGGTTCTGTGTACAGAGGAAATCTTGTGTCGGAAGGTAATGTTGTTGCTGTGAAAGTCTTCAACCTCCAAAACAATGGAGCTAGCAAGAGTTTCATTGTTGAATGTAATGCACTCAAAAACATTAGACACCGAAACTTAGTTAAGGTTTTAACCTGTTGTTCTAGTACAGATTACAAAGGTGAAGAATTTAAAGCACTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTACATCCTGAGATTTTAAATTCAGAGCATCCAAAAACATTGGACCTTGGTGATAGGTTAAACATCATTATCGATGTTGCTTCTGCATTACATTATCTGCATCAAGAATGTGAGCAATTGATTATTCATTGTGATCTAAAGCCAAGTAATGTTCTTCTTAACGACGACATGGTTGCTCATGTGAGTGATTTTGGCATTGCAAAACTTGTCTCAGCCACCGATGGCAATACTAGTACAATTGGAATAAAAGGAACCATTGGCTACGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCCACGTGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACCGGTAGAAGACCCACCCATGAAGTTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGCAATTTCACTTCCTGATACTTAA 969 0.3633 MIGNNKLCGGISDLHLPSCPIKGRKHATNHNFRLVSVIVSVVSFLIILSFIIIITWMKKRNQKPSFDSPTIDQLDKVSYQDLHQGTDGFSDKNLIGSGGFGSVYRGNLVSEGNVVAVKVFNLQNNGASKSFIVECNALKNIRHRNLVKVLTCCSSTDYKGEEFKALVFDYMKNGSLEQWLHPEILNSEHPKTLDLGDRLNIIIDVASALHYLHQECEQLIIHCDLKPSNVLLNDDMVAHVSDFGIAKLVSATDGNTSTIGIKGTIGYAPPEYGMGSEVSTCGDMYSFGILMLEMLTGRRPTHEVFEDGQNLHNFVAISLPDT* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1115 322 SMART serkin_6 89 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1115 322 Gene3D Phosphorylase Kinase; domain 1 70 170 - -
Mtr5g1115 322 PANTHER OS04G0122200 PROTEIN 2 318 - -
Mtr5g1115 322 PANTHER LRR RECEPTOR-LIKE KINASE 2 318 - -
Mtr5g1115 322 SUPERFAMILY Protein kinase-like (PK-like) 63 305 IPR011009 -
Mtr5g1115 322 Pfam Protein kinase domain 90 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1115 322 Gene3D Transferase(Phosphotransferase) domain 1 171 321 - -
Mtr5g1115 322 ProSiteProfiles Protein kinase domain profile. 89 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1115 322 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Mtr5g1115 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1115 Mtr-Chr5 11080655 11082151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1115 1 321 Receptor kinase-like Gene Family AT3G47570 50.298 1.27e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr5g1115 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1115 - - mtr:MTR_5g025930 520.005