Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1112 ATGGACGGTGATCATGGTGATAATCCTTTATCTGACAACGTTATTGTTCTACTTATTGCCATGGGTTCAGCATTATTTGTTGTTTCAATGTATCATGTCGTAGCCATCTGTTTTTGTAACCATCAACGTACCACCACCAACCCAACACAACCACCGCGGCAACCCGCGACACCGAGCCTCGAAGAAAACACATCCACATCAGTAGCAAACCTATTTCCAACACACAAGTACCATAAGAGAAATAAAGATGATGCTGTTCCAGATGGCGAAGGCGACACGTGTGCCGTGTGTTTGGGAGATTTTGAGGAGGGTGAAGAGTTGAGGACTATGCCTGAGTGCTTACACTCTTTTCATGTTTCATGTATTGACATGTGGCTTCATTCACATTCGAATTGCCCCGTTTGTCGTTCCAGTACCGCCCCTTCACCGGTGGTGAATGGGCAGCAGCAGCAGCAGCACAACATAGATATGCCTCATACTAATATGGTTCCACTTGCTATCATGCAAAGTGGACTTGTGAGATGGTGA 528 0.4583 MDGDHGDNPLSDNVIVLLIAMGSALFVVSMYHVVAICFCNHQRTTTNPTQPPRQPATPSLEENTSTSVANLFPTHKYHKRNKDDAVPDGEGDTCAVCLGDFEEGEELRTMPECLHSFHVSCIDMWLHSHSNCPVCRSSTAPSPVVNGQQQQQHNIDMPHTNMVPLAIMQSGLVRW* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1112 175 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Mtr5g1112 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 175 IPR044675 -
Mtr5g1112 175 SMART ring_2 94 135 IPR001841 -
Mtr5g1112 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Mtr5g1112 175 SUPERFAMILY RING/U-box 93 142 - -
Mtr5g1112 175 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 175 - -
Mtr5g1112 175 Pfam Ring finger domain 92 136 IPR001841 -
Mtr5g1112 175 MobiDBLite consensus disorder prediction 46 65 - -
Mtr5g1112 175 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1112 Mtr-Chr5 11068416 11068943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1112 15 137 C3H Transcription Factor Family AT5G17600 35.659 2.69e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1112 - - aip:107639941 192.2