Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1111 ATGGCAGATGATGATGGTGACCATCCTTTTTATAAGAACTCTATTGTACTACTTATTGTCGTGGGTTCAGCTGCATTTGTGGTTGCTTCAATGTACCGTGTCTTAGTCATTTGGTTTTGTCACCCTCAAAGTACCACCACAGATCAAAACCTTCCACAACCACCGCGGTTTGCCACGACACCAAGCACATCCTCATCAATAGTAAACCTAATTCCAACACACAAGTACCACAAGAGAAACAAAGGTGACGTTGTTACAGATGACGAAGGCGGCACATGTGCGGTGTGTTTGGGAGATTTTGAGGAAGGTGAGGAATTGAGGACTATGCCTGAGTGCTTGCATTCTTTTCATGTAAAGTGTATTGACATGTGGCTCCATTCGCATTTGAATTGCCCCGTTTGTCGTTCCAGTGCCGCCCCTTCGCCGGCAGTAAATGCACATCATCACAGTATAGATATGAGTCGATTGGTGCGATGGTGA 480 0.4542 MADDDGDHPFYKNSIVLLIVVGSAAFVVASMYRVLVIWFCHPQSTTTDQNLPQPPRFATTPSTSSSIVNLIPTHKYHKRNKGDVVTDDEGGTCAVCLGDFEEGEELRTMPECLHSFHVKCIDMWLHSHLNCPVCRSSAAPSPAVNAHHHSIDMSRLVRW* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1111 159 Pfam Ring finger domain 92 135 IPR001841 -
Mtr5g1111 159 CDD RING-H2_PA-TM-RING 92 135 - -
Mtr5g1111 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 159 IPR044675 -
Mtr5g1111 159 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Mtr5g1111 159 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 159 - -
Mtr5g1111 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 140 IPR013083 -
Mtr5g1111 159 SUPERFAMILY RING/U-box 85 141 - -
Mtr5g1111 159 SMART ring_2 93 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1111 Mtr-Chr5 11066735 11067214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1111 93 153 C3H Transcription Factor Family AT4G10160 52.459 1.12e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1111 - - aprc:113870478 167.162