Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr5g1111 | ATGGCAGATGATGATGGTGACCATCCTTTTTATAAGAACTCTATTGTACTACTTATTGTCGTGGGTTCAGCTGCATTTGTGGTTGCTTCAATGTACCGTGTCTTAGTCATTTGGTTTTGTCACCCTCAAAGTACCACCACAGATCAAAACCTTCCACAACCACCGCGGTTTGCCACGACACCAAGCACATCCTCATCAATAGTAAACCTAATTCCAACACACAAGTACCACAAGAGAAACAAAGGTGACGTTGTTACAGATGACGAAGGCGGCACATGTGCGGTGTGTTTGGGAGATTTTGAGGAAGGTGAGGAATTGAGGACTATGCCTGAGTGCTTGCATTCTTTTCATGTAAAGTGTATTGACATGTGGCTCCATTCGCATTTGAATTGCCCCGTTTGTCGTTCCAGTGCCGCCCCTTCGCCGGCAGTAAATGCACATCATCACAGTATAGATATGAGTCGATTGGTGCGATGGTGA | 480 | 0.4542 | MADDDGDHPFYKNSIVLLIVVGSAAFVVASMYRVLVIWFCHPQSTTTDQNLPQPPRFATTPSTSSSIVNLIPTHKYHKRNKGDVVTDDEGGTCAVCLGDFEEGEELRTMPECLHSFHVKCIDMWLHSHLNCPVCRSSAAPSPAVNAHHHSIDMSRLVRW* | 160 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr5g1111 | 159 | Pfam | Ring finger domain | 92 | 135 | IPR001841 | - | |
Mtr5g1111 | 159 | CDD | RING-H2_PA-TM-RING | 92 | 135 | - | - | |
Mtr5g1111 | 159 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 2 | 159 | IPR044675 | - | |
Mtr5g1111 | 159 | ProSiteProfiles | Zinc finger RING-type profile. | 93 | 135 | IPR001841 | - | |
Mtr5g1111 | 159 | PANTHER | CHROMATIN REGULATOR PHD FAMILY-RELATED | 2 | 159 | - | - | |
Mtr5g1111 | 159 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 140 | IPR013083 | - | |
Mtr5g1111 | 159 | SUPERFAMILY | RING/U-box | 85 | 141 | - | - | |
Mtr5g1111 | 159 | SMART | ring_2 | 93 | 134 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr5g1111 | Mtr-Chr5 | 11066735 | 11067214 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr5g1111 | 93 | 153 | C3H Transcription Factor Family | AT4G10160 | 52.459 | 1.12e-20 | 82.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr5g1111 | - | - | aprc:113870478 | 167.162 |