Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr5g1104 | ATGGAAAACTACGAAGTTCTTGAAGAGCTTCACAACGTCGAAGCCGAAATCGAAGATGTTCAAGAAAAAATCAGGGCGTTAATTGAAAAGCAAGAGAGATTGTATGAGAGAAAATCTGAACTAAATTCGATTTTGGATGCGTGTAAAGAATCTGAAAATCAGGTTAATAATGCTGCAAGTTCGAGTGCTGTGGAGAATTGGAATGGGACATTTGAATGGGATTCTCAAGCTGATGATCTTAGGTTGAATATTTTTGGTATTTCATCTTATCGTGCTAATCAAAAAGAGATTATTAATGCCATATTGAGTGGAAGAGATGTGCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTTCGCAATGGAGTTGCTCTAGTTGTCAGTCCTTTGCTTTCGCTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGAATCCCAGCATATATGTTAACTTCAACAACAAGTAAGGACAACGAGAAGTTCATATACAAAGCTTTGGAGAAGGGCGAGGGGGACCTCAAAATATTGTATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGATTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTTGTAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACAGTCAACAGGCCAAATTTATTTTATATGGTTAAGGAAAAGTCATCCGTCAGTAAGGTGGTCGTTGACGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATCACGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGGTCATTATCATGCAGATATGGATGTGAATGATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGTCGAGATGGGCTTCCTTCTGAATGCCTATTGTACTTCAGACCTGGTGATGTCCCTCGGCAGAGCTCAATGGTCTTCTATGAAAATTCAGGACTGCAGAATCTCTATGATATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCAGGCATTTTGCTGAGCCATTACAGGAGTGCAATGGGATGTGCGACATATGTGCATTCTCATGTGAGGTGAATGAAGTGGATGTCTCTCATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTTGAGAAAATGAAAACAAAACAGAAGGAAATAGGTTCTTACTTAAAACGAGAGGAAATGGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGCTTTGAAAGAAGAATTTCAGCATACAGCTTATTCTACAAATGCTTACATTACTGTGGGGCCATTGGCGAAGCAAATTTTGCAAGGGAAGAAAACTGTGAAGCTTGAGATTTCTACGGAGGAGAAAACGAAAGCTTCTGCAAGATTGAAACGCAGCCTCGGGTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCAATCATGGAGGAATACTCCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAAAAACCAAACTCACTGGAAGAGTTGGAGAAAGCAATTGGAAAATTGAAGACGGAAAAGTATGGAAATAAAATTCTTGCGCAAATTGTAAAATATTCTGATTTCGAGCTGACTGATGAACAAGTAAATGATGGTAGAGCTGCAAAAAGGTCGAAGACCAAGAAGAACCTTGTTCTTATTGAGACTAGTGAAGATGAAGCATGA | 2076 | 0.4056 | MENYEVLEELHNVEAEIEDVQEKIRALIEKQERLYERKSELNSILDACKESENQVNNAASSSAVENWNGTFEWDSQADDLRLNIFGISSYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGVALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKDNEKFIYKALEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLVEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNHESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSCEVNEVDVSHIQASDQRSTMLQLVEKMKTKQKEIGSYLKREEMEQLILHLLLERALKEEFQHTAYSTNAYITVGPLAKQILQGKKTVKLEISTEEKTKASARLKRSLGSSGLELKLDELRKELSSNHGGILPHSVLSTQQISLLCSQKPNSLEELEKAIGKLKTEKYGNKILAQIVKYSDFELTDEQVNDGRAAKRSKTKKNLVLIETSEDEA* | 692 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr5g1104 | 691 | CDD | SF2_C_RecQ | 281 | 417 | - | - | |
Mtr5g1104 | 691 | SMART | ultradead3 | 86 | 289 | IPR014001 | - | |
Mtr5g1104 | 691 | Pfam | RQC domain | 512 | 575 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Mtr5g1104 | 691 | Coils | Coil | 3 | 37 | - | - | |
Mtr5g1104 | 691 | Gene3D | - | 479 | 571 | IPR036388 | - | |
Mtr5g1104 | 691 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 510 | IPR004589 | GO:0004386|GO:0006310 | |
Mtr5g1104 | 691 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | IPR014001 | - | |
Mtr5g1104 | 691 | PANTHER | ATP-DEPENDENT DNA HELICASE Q1 | 8 | 670 | - | - | |
Mtr5g1104 | 691 | Pfam | RecQ zinc-binding | 420 | 476 | IPR032284 | - | |
Mtr5g1104 | 691 | SMART | helicmild6 | 327 | 408 | IPR001650 | - | |
Mtr5g1104 | 691 | Pfam | DEAD/DEAH box helicase | 92 | 260 | IPR011545 | GO:0003676|GO:0005524 | |
Mtr5g1104 | 691 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 447 | IPR001650 | - | |
Mtr5g1104 | 691 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 129 | 424 | IPR027417 | - | |
Mtr5g1104 | 691 | Gene3D | - | 281 | 477 | IPR027417 | - | |
Mtr5g1104 | 691 | Pfam | HRDC domain | 593 | 652 | IPR002121 | GO:0003676 | |
Mtr5g1104 | 691 | Gene3D | - | 11 | 280 | IPR027417 | - | |
Mtr5g1104 | 691 | CDD | DEXHc_RecQ1 | 72 | 280 | - | - | |
Mtr5g1104 | 691 | ProSiteProfiles | HRDC domain profile. | 584 | 663 | IPR002121 | GO:0003676 | |
Mtr5g1104 | 691 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 8 | 670 | - | - | |
Mtr5g1104 | 691 | Pfam | Helicase conserved C-terminal domain | 309 | 407 | IPR001650 | - | |
Mtr5g1104 | 691 | Gene3D | HRDC domain | 588 | 656 | IPR044876 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr5g1104 | Mtr-Chr5 | 10967815 | 10981908 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr5g1104 | 85 | 422 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 19.547 | 2.42e-08 | 55.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr5g1104 | K10899 | - | gmx:100817635 | 1146.34 |