Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1104 ATGGAAAACTACGAAGTTCTTGAAGAGCTTCACAACGTCGAAGCCGAAATCGAAGATGTTCAAGAAAAAATCAGGGCGTTAATTGAAAAGCAAGAGAGATTGTATGAGAGAAAATCTGAACTAAATTCGATTTTGGATGCGTGTAAAGAATCTGAAAATCAGGTTAATAATGCTGCAAGTTCGAGTGCTGTGGAGAATTGGAATGGGACATTTGAATGGGATTCTCAAGCTGATGATCTTAGGTTGAATATTTTTGGTATTTCATCTTATCGTGCTAATCAAAAAGAGATTATTAATGCCATATTGAGTGGAAGAGATGTGCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTTCGCAATGGAGTTGCTCTAGTTGTCAGTCCTTTGCTTTCGCTAATTCAAGATCAGGTAATGGGTTTGACTGCTTTGGGAATCCCAGCATATATGTTAACTTCAACAACAAGTAAGGACAACGAGAAGTTCATATACAAAGCTTTGGAGAAGGGCGAGGGGGACCTCAAAATATTGTATGTTACTCCAGAAAAGATATCAAAAAGCAAGAGATTTATGTCAAAACTTGAAAAGTGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAACCTTGGTATTCTCAAGACTCAGTTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTTGTAGAGATGTTGCACATTCGTAGATGTGTCAAATTTGTCAGCACAGTCAACAGGCCAAATTTATTTTATATGGTTAAGGAAAAGTCATCCGTCAGTAAGGTGGTCGTTGACGAAATTGCTGAATTCATTCAAGAATCTTATCCAAATCACGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGCTAAGGGAGAGAGGAATTTCAGCTGGTCATTATCATGCAGATATGGATGTGAATGATCGTGAAAAAGTACATATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGTACGGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGTCGAGATGGGCTTCCTTCTGAATGCCTATTGTACTTCAGACCTGGTGATGTCCCTCGGCAGAGCTCAATGGTCTTCTATGAAAATTCAGGACTGCAGAATCTCTATGATATAGTACGATATTGTCAGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCAGGCATTTTGCTGAGCCATTACAGGAGTGCAATGGGATGTGCGACATATGTGCATTCTCATGTGAGGTGAATGAAGTGGATGTCTCTCATATTCAGGCAAGTGATCAGAGGTCAACAATGTTGCAATTAGTTGAGAAAATGAAAACAAAACAGAAGGAAATAGGTTCTTACTTAAAACGAGAGGAAATGGAGCAGCTCATCTTACACCTTTTACTGGAGCGTGCTTTGAAAGAAGAATTTCAGCATACAGCTTATTCTACAAATGCTTACATTACTGTGGGGCCATTGGCGAAGCAAATTTTGCAAGGGAAGAAAACTGTGAAGCTTGAGATTTCTACGGAGGAGAAAACGAAAGCTTCTGCAAGATTGAAACGCAGCCTCGGGTCATCTGGCTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTTTCTTCCAATCATGGAGGAATACTCCCACACTCTGTCTTGTCTACTCAACAAATCAGCTTACTATGTTCTCAAAAACCAAACTCACTGGAAGAGTTGGAGAAAGCAATTGGAAAATTGAAGACGGAAAAGTATGGAAATAAAATTCTTGCGCAAATTGTAAAATATTCTGATTTCGAGCTGACTGATGAACAAGTAAATGATGGTAGAGCTGCAAAAAGGTCGAAGACCAAGAAGAACCTTGTTCTTATTGAGACTAGTGAAGATGAAGCATGA 2076 0.4056 MENYEVLEELHNVEAEIEDVQEKIRALIEKQERLYERKSELNSILDACKESENQVNNAASSSAVENWNGTFEWDSQADDLRLNIFGISSYRANQKEIINAILSGRDVLVIMAAGGGKSLCYQLPAVLRNGVALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKDNEKFIYKALEKGEGDLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLVEMLHIRRCVKFVSTVNRPNLFYMVKEKSSVSKVVVDEIAEFIQESYPNHESGIVYCFSRKECEQVAKELRERGISAGHYHADMDVNDREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGMCDICAFSCEVNEVDVSHIQASDQRSTMLQLVEKMKTKQKEIGSYLKREEMEQLILHLLLERALKEEFQHTAYSTNAYITVGPLAKQILQGKKTVKLEISTEEKTKASARLKRSLGSSGLELKLDELRKELSSNHGGILPHSVLSTQQISLLCSQKPNSLEELEKAIGKLKTEKYGNKILAQIVKYSDFELTDEQVNDGRAAKRSKTKKNLVLIETSEDEA* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1104 691 CDD SF2_C_RecQ 281 417 - -
Mtr5g1104 691 SMART ultradead3 86 289 IPR014001 -
Mtr5g1104 691 Pfam RQC domain 512 575 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mtr5g1104 691 Coils Coil 3 37 - -
Mtr5g1104 691 Gene3D - 479 571 IPR036388 -
Mtr5g1104 691 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 83 510 IPR004589 GO:0004386|GO:0006310
Mtr5g1104 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Mtr5g1104 691 PANTHER ATP-DEPENDENT DNA HELICASE Q1 8 670 - -
Mtr5g1104 691 Pfam RecQ zinc-binding 420 476 IPR032284 -
Mtr5g1104 691 SMART helicmild6 327 408 IPR001650 -
Mtr5g1104 691 Pfam DEAD/DEAH box helicase 92 260 IPR011545 GO:0003676|GO:0005524
Mtr5g1104 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 447 IPR001650 -
Mtr5g1104 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 424 IPR027417 -
Mtr5g1104 691 Gene3D - 281 477 IPR027417 -
Mtr5g1104 691 Pfam HRDC domain 593 652 IPR002121 GO:0003676
Mtr5g1104 691 Gene3D - 11 280 IPR027417 -
Mtr5g1104 691 CDD DEXHc_RecQ1 72 280 - -
Mtr5g1104 691 ProSiteProfiles HRDC domain profile. 584 663 IPR002121 GO:0003676
Mtr5g1104 691 PANTHER DNA HELICASE RECQ FAMILY MEMBER 8 670 - -
Mtr5g1104 691 Pfam Helicase conserved C-terminal domain 309 407 IPR001650 -
Mtr5g1104 691 Gene3D HRDC domain 588 656 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1104 Mtr-Chr5 10967815 10981908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1104 85 422 Eukaryotic Initiation Factors Gene Family AT3G19760 19.547 2.42e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1104 K10899 - gmx:100817635 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1104 5 10967815 10981908 Mtr5g1104 5 10967815 10981908 ECH