Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1101 ATGTACGGCGGCGGTGGAGGAGACGATGCTCTGGCAGCTCGCCTGGGAATAGTACCACAGTCACTTCTGATTCCAACATCGTCGTTGATGTCACCGGCGGCGATGAGAGAGGAGAGGGTACCAGCTCAGCCGCAGTGGAGTCAGCAGGAGACAAGAGAGTTCATAGCGATAAGGGCGGAGCTGGAGAGGGATTTTACTGCTTCGAAGAGGAACAAGACGCTTTGGGAAGTGGTGAGTTCGAAGATGAGGGAGAGAGGATATAGGAGGAGTCCTGAACAGTGTAAATGCAAGTGGAAGAATCTTGTTAATCGCTATAAGGGTAAAGAGACATCTGATCCAGAACATGGCAAGCAATGCCCATTTTTTGAAGAATTGCATGCAGTTTTTACCGAAAGAGCACATAGCATGCAACGGTTACTTCTTGAATCCGAAACTCGTTCAGCTCAAACAAAGAAAGGAGTGAAGAAAATAAGAAGTGGAGACCGATCCTCTGACGAATTCTCGGAAGATGATGAGGAAGTTGAAGATGACAGTGAAGAGGAGAGACCTGTGAGAAGCAATACACGTAAAAGGAAAGCTGGCAAAATTGCAACAGAGAAGTCTTCAAGGGCAAACAATGCAAACAATAGTACTGGTAATATTCAAGAAATGCTCAAGGAATTTTTCCAACACCAATTAAAAGTGGAGATGCAGTGGAGGGAGGTGATGGAAAGGCGGGCACATGAAAAACAGTTGTTTGAACAGGAATGGCGGCAGTCGATGGAAAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGAATGGAGGGAGAGAGAAGAGCATAGGAGACTGAGGGAAGAGAATAGGGCAGAGAGAAGGGACGCTTTGTTGACGACCCTTTTAAACAAACTCATTCATGAATCTAACTAA 909 0.4587 MYGGGGGDDALAARLGIVPQSLLIPTSSLMSPAAMREERVPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEELHAVFTERAHSMQRLLLESETRSAQTKKGVKKIRSGDRSSDEFSEDDEEVEDDSEEERPVRSNTRKRKAGKIATEKSSRANNANNSTGNIQEMLKEFFQHQLKVEMQWREVMERRAHEKQLFEQEWRQSMEKLERERLMIEQEWREREEHRRLREENRAERRDALLTTLLNKLIHESN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1101 302 MobiDBLite consensus disorder prediction 148 165 - -
Mtr5g1101 302 CDD GT1 44 109 - -
Mtr5g1101 302 Pfam Myb/SANT-like DNA-binding domain 44 127 IPR044822 -
Mtr5g1101 302 Gene3D - 46 107 - -
Mtr5g1101 302 SMART sant 42 104 IPR001005 -
Mtr5g1101 302 Coils Coil 247 267 - -
Mtr5g1101 302 PANTHER - 34 300 - -
Mtr5g1101 302 ProSiteProfiles Myb-like domain profile. 46 102 IPR001005 -
Mtr5g1101 302 MobiDBLite consensus disorder prediction 141 210 - -
Mtr5g1101 302 MobiDBLite consensus disorder prediction 180 198 - -
Mtr5g1101 302 PANTHER - 34 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1101 Mtr-Chr5 10946271 10948982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1101 26 302 Trihelix Transcription Factor Family AT2G38250 42.143 1.56e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mtr5g1101 Myb_DNA-bind_4 1.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1101 - - gmx:100812635 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1101 5 10946271 10948982 Mtr5g1101 5 10946271 10948982 ECH