Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1088 ATGAAGGAACCATCAAATTCAAAACCATGGAGACCATTCACATCAAATTGTTGCACAACTGAAAACCAAACAATATTAAGAAACTTTAGTAAATGCAAGCCTTCACGTTCAGATTATTCTAAGAACATTGCTCCTTTACCATCTTTTAGGAGACTATCTTTTTCTGATCTTAGTCGTTCGTCTTCAACGCGAATCAATGAAGATCTTGCACTGTCTTTTGGTTCTGATTTGTTTGATTTTCAGCTGAGTGAACTTCGTGCTATCACTCAGAATTTTTCTAGTAATTTCTTGCTTGGTGAAGGTGGTTTTGGAACTGTTCATAAGGGTTATTTTGATGATAATTTTAGACAAGGTTTGAAGGCTCAACCTGTTGCTGTTAAGCTTTTGGATATTGAAGGTTTACAAGGACATCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACATCCAAATTTGGTAAAATTGATTGGATATTGTTGTGAAGATGAAGAAAGACTACTTGTCTATGAATTCATGCCAAGAGGAAGCTTGGAGAATCACTTGTTTAGAAGACTAACATCACTACCTTGGGCAACAAGAATAAAAATTGCAATAGGTGCTGCTAAAGGCCTTTCTTTCTTGCATGGAGCTGAGAAACCAGTCATTTACAGAGATTTCAAGACTTCCAATGTCTTACTTGATTCAGACTTCACAGCAAAATTATCAGATTTTGGACTTGCAAAGATGGGACCAGAAGGATCAAAGTCACATGTTACAACCAGAGTTATGGGAACTTATGGATATGCAGCCCCAGAGTACATCTCAACAGGTCACTTGACTACAAAAAGTGATGTCTATAGCTTCGGCGTAGTCCTGCTAGAACTGCTCACAGGAAGAAGAGCAACAGACAAAACAAGACCAAAGACAGAACAAAACATTGTGGATTGGACAAAGCCTTACTTGAGTAGCAGTAGAAGATTGAGGTACATTATGGATCCAAGGCTTGCGGGACAATATTCTGTCAAAGGTGCAAAAGAGATTGCACATTTGGCATTGCAATGTATAAGTCTGCATCCTAAAGACAGACCAAGAATGGCGATGATTGTTGAAACACTTGAAAGCCTAGAACAGTTTAAAGATATGGCTGTTACTAGTGGACACTGGCCAATATCATCAAAATCTACTAAAAATGTTTCATCAAATAATAAGGTGAAAGCTAGAGCAATTAGTGTAAACCAGAAGAAACAGGCTCCAGTTAAGAGCATAAAGACTTGA 1263 0.38 MKEPSNSKPWRPFTSNCCTTENQTILRNFSKCKPSRSDYSKNIAPLPSFRRLSFSDLSRSSSTRINEDLALSFGSDLFDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYFDDNFRQGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWATRIKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNIVDWTKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIAHLALQCISLHPKDRPRMAMIVETLESLEQFKDMAVTSGHWPISSKSTKNVSSNNKVKARAISVNQKKQAPVKSIKT* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1088 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Mtr5g1088 420 Gene3D Phosphorylase Kinase; domain 1 54 174 - -
Mtr5g1088 420 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL15-RELATED 33 412 - -
Mtr5g1088 420 Pfam Protein tyrosine and serine/threonine kinase 98 368 IPR001245 GO:0004672|GO:0006468
Mtr5g1088 420 PANTHER OS01G0588500 PROTEIN-RELATED 33 412 - -
Mtr5g1088 420 ProSiteProfiles Protein kinase domain profile. 92 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1088 420 SUPERFAMILY Protein kinase-like (PK-like) 72 369 IPR011009 -
Mtr5g1088 420 CDD STKc_IRAK 98 371 - -
Mtr5g1088 420 Gene3D Transferase(Phosphotransferase) domain 1 175 386 - -
Mtr5g1088 420 ProSitePatterns Protein kinases ATP-binding region signature. 98 127 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1088 Mtr-Chr5 10866292 10868604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1088 80 402 Glycoside Hydrolase AT3G07070 49.541 1.90e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr5g1088 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1088 - - gmx:100814241 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1088 5 10866292 10868604 Mtr5g1088 5 10866292 10868604 ECH