Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1080 ATGGGGTCTAGTAGTAGCAAAACCAGTTCTTCTTGTAGCTCTTCATCTTCTTCTTGCAGTTTAAGAAAAGGTCGATCCAAACGGTATAAAGGTTTTCCTTCTTATTGTCTTGGAACTACTTCTGGATCTCGTGACAGTGATAATGATGACCAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGTTACATACACCAGTAGCAATGAAATTGACTCGGATGAAGTGAAATCAGAGTCTTTTAGAAAAGTTAAACCTGAAGAAATACCCTGTATGCCTTCTAACATTGATCTTGATGAGTGGAGTCGCACCGAATCCAGAACCGCTAGCAGCTCTGCACATGGTTCTTCAACTCAATCCACTAATCCTGCAAGTCGTTTCCTTTCTCGTTTTAGCATCATTCCGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTAGGGTCATCTCGACCTTGTCCTGTTTCATCGGCAAGTCTTTCGATATTTAACAATGAAGACGAGCTTAGTCTGCATCCACGGCCTCATGACTTGCTTAATGCGTCTTTTGTTAATCAAGTCCCTATAGAGAATCATGAAAATGCTTCTAATAATTTAAGTTCAAATGTCCCGACATTCGGTTTGGATCGCAACTTGTCGAGTCCAATGCTGTCTCCTATCCAAGATATGGTTAGAGATGGATATGCTACGCGAGACATGCCTGGTGTGAACATGTTTTCTCCAAGAATTCATACTGAGACAGGAAATGCTGAGACTAGACAAATAGATAGACGAAATGGAGCCCGAGAACCTGTTGATCGCAATGTTCGTTTCAGCCGAACTTTAAGTGTCGGAAGGCTTCGTGATAGAGTTCACCGCCGATCAGGATTGGCTGACTTCAACTTTTGCCCTCTGACACAAGAGAGAGAACTGAGAGATGCTAGTGAGGATAATGGGAGACAAGTAGGGGAGAGGGGTACAAGAGTGTCACCATCTGATCGCAATGCTTTAAATTCTCATACTACATCCGGATATCCTTTACCAAACATGTCTAGCTCTCCGTTTACCACCCAAGACTATGAGGTCGAGGCTTCAAGATCAAGAGAAACTAGATATCAGGATCTACTGGAACATAGGTCTAATTTCCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTCGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTACATGCAGATTAACTAGTCGCGATAACAATTCAAATTCAAACGATGATACAAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCAGTGGTTTTATCTTCCCGCCCTTCTGTATCTTCTATCGGATCTGTTCCTGCACCTGCTGAAGTTGTCGAATCCTTACCTGTCAAATTATACACAAAGTTGCAAAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTACGAAGATGGAGACAGCATGCGAGTACTTCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAAGAGGTTCACAGGGTATGCCCACTATGTCGAGGAGACATTTGTATATCAGATTCACTACCAACAGAGAACTAA 1683 0.4195 MGSSSSKTSSSCSSSSSSCSLRKGRSKRYKGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGSDVTYTSSNEIDSDEVKSESFRKVKPEEIPCMPSNIDLDEWSRTESRTASSSAHGSSTQSTNPASRFLSRFSIIPGNISFRLSRTTSLGSSRPCPVSSASLSIFNNEDELSLHPRPHDLLNASFVNQVPIENHENASNNLSSNVPTFGLDRNLSSPMLSPIQDMVRDGYATRDMPGVNMFSPRIHTETGNAETRQIDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFNFCPLTQERELRDASEDNGRQVGERGTRVSPSDRNALNSHTTSGYPLPNMSSSPFTTQDYEVEASRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRLTSRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEVVESLPVKLYTKLQKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEVHRVCPLCRGDICISDSLPTEN* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1080 560 CDD mRING-H2-C3H2C2D_ZSWM2 504 547 - -
Mtr5g1080 560 MobiDBLite consensus disorder prediction 305 348 - -
Mtr5g1080 560 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 560 - -
Mtr5g1080 560 ProSiteProfiles Zinc finger RING-type profile. 505 547 IPR001841 -
Mtr5g1080 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 551 IPR013083 -
Mtr5g1080 560 MobiDBLite consensus disorder prediction 325 348 - -
Mtr5g1080 560 MobiDBLite consensus disorder prediction 72 86 - -
Mtr5g1080 560 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Mtr5g1080 560 SMART ring_2 505 546 IPR001841 -
Mtr5g1080 560 MobiDBLite consensus disorder prediction 53 71 - -
Mtr5g1080 560 SUPERFAMILY RING/U-box 484 553 - -
Mtr5g1080 560 MobiDBLite consensus disorder prediction 105 123 - -
Mtr5g1080 560 Pfam Ring finger domain 504 547 IPR001841 -
Mtr5g1080 560 MobiDBLite consensus disorder prediction 1 123 - -
Mtr5g1080 560 MobiDBLite consensus disorder prediction 1 22 - -
Mtr5g1080 560 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1080 Mtr-Chr5 10805223 10809944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1080 45 554 C3H Transcription Factor Family AT5G45290 46.415 9.17e-120 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1080 - - gmx:100815830 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1080 5 10805223 10809944 Mtr5g1080 5 10805223 10809944 ECH
Mtr5g1080 5 10805223 10809944 Mtr8g2263 8 32860837 32865106 PCT