Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1079 ATGAAGAACACAACCGAAGATGCTACCTCCACACAAGATCTCGACCCACAAAGCGACCACAGCTCTGATTATTTACCCCAACCACAGCCCCGCCGTCTACGCGGCTTCGCCGCCACGGCGGCGGGGACGAATTCCACCGGAAAAGGAAAAAAAGAGCGAGAGAAAGAGAAGGAACGAACGAAGCTCCGGGAACGACACCGTCGAGCTATCACGAGTAGAATGTTAGCTGGACTCCGTCAGTATGGTAACTTCCCTCTCCCGGCGCGTGCTGATATGAATGATGTACTTGCTGCTCTCGCGCGTGAAGCTGGTTGGATTGTTGATGCTGATGGAACTACTTATCGCCAGTGTCTCCCTCCTTCCAACATGGGATCATTTGCCGCAAGGTCAGTTGAAAGTCAACCATCTGGTGGTACTTTGAGAACTTGTTCGGTTAAGGAAACACTAGAGAATCAGTCACCGGGACTTAGAATTGATGAATGTGTGTCACCTGCATCTATTGATTCTGTTTTAATTGCAGAAAGGGATTCAAAGAATGAAAACTATGCAAGTGTAAGCCCAATCAATTCAACTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATCAAAATGACTTCAATTGCACACCATATGTTCCTGTTTACATAAAACTCCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATGGATCCTGAAGGCATTAGGCAGGAGCTAATCCATATTAAGTCCTTAAATATTGACGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAACTCCCAGAAATATGAGTGGTCTGGCTATAGGGAGCTTTTTAGTATAATTAGAGAATTCAAGCTGAATATACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGACATATTTTTCACAGATCGTGAAGGACGGAGAAATACTGAATGCCTATCTTGGGGAATTGACAAAGAGCGAGTTCTCAAAGGAAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTATGATTGATGCTGTAGAAATTGGACTGGGAGCATCCGGGGAGCTGAAATACCCTTCCTTTTCAGAAAGGATGGGGTGGAGGTATCCTGGTATTGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGCAGAGCTGCCAAACTACGCGGTCACTCTTTTTGGGCTAGAGGACCTGATAATGCTGGGCACTACAACTCTATGCCACATGAGACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAGACTTTAGTAGATCATGCAGATAATGTTTTGTCTCTTGCAAACCTTGCTTTTGAGGGAACAAAAATTATTGTCAAGGTTCCTGCCGTATACTGGTGGTACAAGACTCCTAGTCATGCAGCAGAATTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATACTCTCCTGTGTTTGAGGTTCTGAAAAAGCACGCTGTCACCATGAAATTTGTCTGCTTAGGATTTAATCCTTCCAACCAGGAAGCTAATGAGTCATTGGTTGATCCAGATGGCCTGAGTTGGCAGGTATTAAACTCAGCTTGGGAACGAGGGCTGATCACTTCTGGAGAGAATGCAATCTTTTGCTATGATAGAGAAAGGTACGAGAGATTGATTGAGATGGCCAAGCCCAGAAATGATCCTGATCACCGGCACTTTTCGTTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAATGTTTGCCTGTCGGAATTGGATTTCTTCATCAAATGCATGCATGGTGAGATGACAGGGAATCTTTAA 1953 0.4434 MKNTTEDATSTQDLDPQSDHSSDYLPQPQPRRLRGFAATAAGTNSTGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWIVDADGTTYRQCLPPSNMGSFAARSVESQPSGGTLRTCSVKETLENQSPGLRIDECVSPASIDSVLIAERDSKNENYASVSPINSTDCLEADQLMQDIHSGVHQNDFNCTPYVPVYIKLPAGIINKFCQLMDPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWNSQKYEWSGYRELFSIIREFKLNIQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGMIDAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLVDHADNVLSLANLAFEGTKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCLGFNPSNQEANESLVDPDGLSWQVLNSAWERGLITSGENAIFCYDRERYERLIEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGEMTGNL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1079 650 MobiDBLite consensus disorder prediction 1 25 - -
Mtr5g1079 650 Pfam BES1/BZR1 plant transcription factor, N-terminal 47 191 IPR008540 -
Mtr5g1079 650 SUPERFAMILY (Trans)glycosidases 212 646 IPR017853 -
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 252 266 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 273 291 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 295 316 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 388 410 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 461 480 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 495 511 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 512 523 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 530 553 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 568 590 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 MobiDBLite consensus disorder prediction 1 64 - -
Mtr5g1079 650 Pfam Glycosyl hydrolase family 14 234 617 IPR001554 GO:0000272|GO:0016161
Mtr5g1079 650 MobiDBLite consensus disorder prediction 47 64 - -
Mtr5g1079 650 Gene3D Glycosidases 208 649 - -
Mtr5g1079 650 PANTHER BETA-AMYLASE 8 52 649 - -
Mtr5g1079 650 PANTHER - 52 649 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1079 Mtr-Chr5 10788795 10795787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1079 60 646 Glycoside Hydrolase AT5G45300 69.610 0.0 856
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Mtr5g1079 Glyco_hydro_14 5.9e-86 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1079 K01177 - gmx:100777004 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1079 5 10788795 10795787 Mtr5g1079 5 10788795 10795787 ECH