Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1077 ATGTTGGAAGGCGAAGTACCAACAAATGGCGTATTTGGAAATGTATCCCAAATAGAAGTGACTGGAAACAAGAAGCTTTGTGGAGGTATTTCCCGGCTACATCTACCATCATGCCCTGTCAAGGGTATTAAACATGCAAAACGACACAAGTTCAGGTTGATAGCAGTGATAGTTAGCGTGGTTTCTTTTCTTCTCATACTTTCATTTATCATAACTATCTACTGCATAAGGAAAAGAAATCCAAAGCGATCTTTTGATTCACCAACAATTGAGCAACTAGATAAGGTTTCATACCAAGAGTTACTCCAAGGAACAGATGGGTTCTCGGATAAAAACCTGATCGGATCAGGAAGTTCTGGTGATGTGTACAGAGGAAATCTTGTGTCAGAAGACAATATTGTTGCTATAAAAGTCTTCAACCTCCAAAACAATGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTAAAAAATATTCAACACCGGAATTTAGTTAAGATTTTAACATGTTGTTCTAGTACTGATTATAAAGGTCAAGAATTTAAAGCTCTGGTTTTTGATTACATGAAAAATGGAAGCTTAGAACGATGGCTGCACCCTAGGAATTTAAATGCAGAGACTCCAACAACATTGGATCTTGATCAAAGACTGAATATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCGAGAATGTGAGCAATTGGTCCTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGAATAGCAAGACTAGTTCAAGCCATTGCTTGTACCTCTCTTAAGGAAACTAGTACAACTGGAATAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCAACATCTGGTGACATGTATAGCTTTGGAGTCCTTATGTTGAAAATACTTACTGGTAGAAGACCCACTGATGAAGTTTTTCAAGATGGTCAAAATCTGCATAACTTTGTAGCAGCTTCATTTCCTGGTAACATTATAGATATTTTGGACCCACATCTTGAAGCAAGAGATGTAGAAGTAACAAAACAAGATGGAAACCGAGCGATTCTTATTGCAGGGGTAGAGGAATCCTTAGTTTCACTTTTTAGAATTGGACTTATTTGTTCAATGGAATCACCGAAAGAAAGAATGAATATTATGGATGTTACTCAAGAGCTTAACACAATCCGAACTCGTTAG 1242 0.3752 MLEGEVPTNGVFGNVSQIEVTGNKKLCGGISRLHLPSCPVKGIKHAKRHKFRLIAVIVSVVSFLLILSFIITIYCIRKRNPKRSFDSPTIEQLDKVSYQELLQGTDGFSDKNLIGSGSSGDVYRGNLVSEDNIVAIKVFNLQNNGAHKSFIVECNALKNIQHRNLVKILTCCSSTDYKGQEFKALVFDYMKNGSLERWLHPRNLNAETPTTLDLDQRLNIIIDVASALHYLHRECEQLVLHCDLKPSNVLLDDDMVAHVSDFGIARLVQAIACTSLKETSTTGIKGTVGYAPPEYGMGSEVSTSGDMYSFGVLMLKILTGRRPTDEVFQDGQNLHNFVAASFPGNIIDILDPHLEARDVEVTKQDGNRAILIAGVEESLVSLFRIGLICSMESPKERMNIMDVTQELNTIRTR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1077 413 PANTHER OS04G0122200 PROTEIN 1 410 - -
Mtr5g1077 413 Pfam Protein kinase domain 109 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1077 413 SMART serkin_6 108 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1077 413 Gene3D Transferase(Phosphotransferase) domain 1 190 413 - -
Mtr5g1077 413 PANTHER LRR RECEPTOR-LIKE KINASE 1 410 - -
Mtr5g1077 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Mtr5g1077 413 Gene3D Phosphorylase Kinase; domain 1 89 189 - -
Mtr5g1077 413 ProSiteProfiles Protein kinase domain profile. 108 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1077 413 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Mtr5g1077 413 SUPERFAMILY Protein kinase-like (PK-like) 83 407 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1077 Mtr-Chr5 10784114 10788638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1077 2 413 Receptor kinase-like Gene Family AT3G47570 44.681 1.46e-117 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr5g1077 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1077 - - mtr:MTR_5g026200 803.897