Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1073 ATGAGGAAGAGAAACCAAAAACCATCCTTTGATTCACCAACTATTGATCAACTAGCTAAGGTTTCATATCAAGACTTACACCGAGGAACCGATGGGTTCTCAGAAAGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGTGTCAGAAGACAATGTTGTTGCCGTAAAGGTCTTGAACCTCAAAAAGAAGGGAGCTCACAAGAGTTTCATTGTTGAATGTAATGCACTAAAAAATATCAGACACCGAAATCTAGTGAAGATATTAACATGTTGTTCTAGTACAGATTACAAAGGTCAAACTTTTAAAGCTCTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCTTGAGATTTTAAATGCAGATCATCCAAGAACATTGGACCTTGGTCATAGATTAAACATCATGATCGATGTCGCCACTGCATTACATTATCTTCACCAAGAATGTGAACAATTAATCATTCATTGTGATCTTAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGACTGATTTTGGCATAGCAAAACTTGTCTCGGATATTGGCATTACCTCTGATAAGGATACCAGTACAGTTGGAATAAAAGGGAGCATTGGCTATGCTCCCCCAGAGTATGGAATGGGTTCTGAAGTGTCCACATGTGGTGACATGTATAGCTTTGGAATCCTTATGTTGGAAATGCTTACCGGTAGAAGACCCACTGATGAATTTTTTCAAGATGGTCAAAATCTGCATAACTTTGTTGCATCTTCATTTCCTGACAATCTTATAAAGATTTTGGATCCACATCTTGTATCAAGAGATGCAGAAGATGGAAGCATAGAGAATCTTATTCCTGCGGTAAATGAATGCTTAGTTTCTCTTTTCAGGATTGGACTTGTTTGTACAATGGAATCACCGATAGAAAGAATGAATATTATGGATGTCACTAGAGAGCTCAACATAATCAGAAAGACATTTCTCTCTGGTGTTCACACTCATTAG 1029 0.3741 MRKRNQKPSFDSPTIDQLAKVSYQDLHRGTDGFSERNLIGSGSFGSVYKGNLVSEDNVVAVKVLNLKKKGAHKSFIVECNALKNIRHRNLVKILTCCSSTDYKGQTFKALVFDYMKNGSLEQWLHLEILNADHPRTLDLGHRLNIMIDVATALHYLHQECEQLIIHCDLKPSNVLLDDDMVAHVTDFGIAKLVSDIGITSDKDTSTVGIKGSIGYAPPEYGMGSEVSTCGDMYSFGILMLEMLTGRRPTDEFFQDGQNLHNFVASSFPDNLIKILDPHLVSRDAEDGSIENLIPAVNECLVSLFRIGLVCTMESPIERMNIMDVTRELNIIRKTFLSGVHTH* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1073 342 SUPERFAMILY Protein kinase-like (PK-like) 7 328 IPR011009 -
Mtr5g1073 342 Gene3D Phosphorylase Kinase; domain 1 14 114 - -
Mtr5g1073 342 Gene3D Transferase(Phosphotransferase) domain 1 115 337 - -
Mtr5g1073 342 ProSiteProfiles Protein kinase domain profile. 33 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1073 342 PANTHER OS04G0122200 PROTEIN 1 337 - -
Mtr5g1073 342 SMART serkin_6 33 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1073 342 PANTHER LRR RECEPTOR-LIKE KINASE 1 337 - -
Mtr5g1073 342 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Mtr5g1073 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Mtr5g1073 342 Pfam Protein kinase domain 34 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1073 Mtr-Chr5 10738510 10739806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1073 1 341 Receptor kinase-like Gene Family AT3G47570 48.295 5.88e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr5g1073 Pkinase 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1073 - - mtr:MTR_5g025930 562.762