LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g1069	ATGTTTCCAACATTTTCATTTTGGTTATCTCTTCTCTTTACTCTCAACTTTGTCCAAAACACAATTACCTCTACCTTAGGAAACAAGACAGATTACTTAGCGTTACTCAAATTCAAAGAATCAATTTCTAATGACCCATATGGAATCTTGGCCTCTTGGAATACTTCAAATCACTACTGTAATTGGCATGGAATTACATGTAATCCCATGCATCAAAGAGTTACAGAGCTAGACTTAGATGGATTTAATTTGCATGGAGTCATATCTCCCCATGTAGGCAATCTCTCTTTTTTGACAAACCTCATCCTTGCAAAAAATAGTTTCTTTGGAAATATCCCTCATGAACTCGGTCAGTTGTCACGATTGCAGCAACTCGTTCTCTCCAATAACTCAATGACAGGGGAGATTCCTACAAACTTGACAAGTTGCTCTGATCTTGAATACTTATTCTTATCTGGAAATCATCTGATTGGTAAAATACCAATTCGAATTAGCTCTCTTCATAAGCTTCAGTTGTTGGAGCTTACAAATAACAATTTAACCGGAAGAATTCAACCATCCATAGGAAATATTTCATCTCTAACTATTATATCAATGGATATGAATCACTTAGAGGGAGATATACCACAAGAAATGTGCAGCCTCAAACACTTGACAAAAATTACAGTGTTTAGTAACAGACTATCTGGTACATTTCATTCTTGTTTTTATAATATGTCATCTCTTACTTATATCTCAGTAACACTCAATAAATTTAATGGATCTCTTCCATCAAATATGTTCAACACCCTTTCCAATCTTCAATGTTTCTATATTGCATCCAATCAATTCTCAGGTACAATCCCTATTTCCATTGCAAATGCTTCTTCCCTAAAAGAACTCGACTTATCTGATCAAAATAATTTGCTCGGACAAGTTCCAAGTCTGGGGAATTTACATGATCTTCAACGGCTAAATCTAGAATTTAACAATTTAGGAGACAATACAACTAAGGATTTAGAATTTTTAAAAACCTTGACAAACTGTAGTAAACTAACCGTGATTTCTATAGCTTATAATAATTTTGGAGGTAACTTGCCAAATTTTGTAGGCAATTTATCCACTCAACTTAGTCAGCTATATGTTGGGGGTAATCAGATGTCTGAAAAAATTCCTGCAGAATTAGGAAATCTAATTGGTTTAATTCACTTAAGCTTGGAATATAACCACTTTGAAGGAATTATTCCTACTACTTTTGGGAAGTTTGAGAGGATGCAAAGATTAGTACTGAATGGAAATAGGTTGTCAGGAATGATACCACCCATCATAGGCAACCTCACTCATTTATTTTTTTTTAGTGTAGGAGATAATATGTTGGAAGGAAACATTCCTTCAAGCATTGGATATTGCCAAAAGCTACAATACCTAGACCTTTCACAAAACATTCTCCGAGGAACCATACCCATAGAGGTTTTAAGTCTTTCCTCCCTAACAAACATACTGAATTTGTCAAATAACACATTGAGTGGTAGCTTACCGAGAGAAGTGGGTATGCTAAGAAATATCAATGAGTTAGATATCTCCGATAATTATCTATCAGGTGAGATTCCTAGAACCATTGGTGAATGCATAGTCTTAGAATACCTTTCTTTGCAAGGGAACTCGTTCAACGGAACCATTCCATCCACATTGGCTTCACTTAAAGGTCTTCAATATTTAGACTTGTCAAGAAATCGGTTGTATGGACCAATTCCAAATGTTCTACAAAGTATATCAGTTTTAGAACACTTGAATGTTTCTTTCAACATGTTGGAAGGAGAAGTACCGAAAGAAGGTGTCTTTGGAAATATAAGTAGGTTAGTTGTGACTGGAAACGATAAACTTTGTGGAGGTATTTCAGAGCTTCATCTACAACCATGCCTTGCCAAAGATATGAAATCTGCAAAACACCATATTAAGTTGATAGTAGTGATAGTTAGTGTGGCATCTATTCTTCTCATGGTGACAATTATTCTAACTATCTACCAAATGAGGAAAAGAAACAAGAAACAATTGTATGATCTACCAATAATTGACCCGCTTGCTAGGGTTTCATACAAAGACCTTCACCAAGGAACTGATGGATTTTCTGCTAGAAACCTGGTTGGATTAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGCATCAGAAGATAAAGTTGTTGCCATAAAGGTCCTGAACCTTCAAAAAAAGGGATCTCACAAGAGCTTCGTTGTTGAATGTAATGCACTAAAAAATATGAGGCATAGAAATTTGGTTAAGGTTTTGACATGTTGTTCGAGTACCGATTACAAAGGTCAAGAGTTTAAGGCTTTAGTGTTTGAATACATGAACAACGGAAACCTAGAACAATGGCTACATCCAGGTATAATGAATGCAGGGATTCAAAGAATGTTGGACCTTGATCAACGACTGAATATCATTGTTGACATTGCTTCTGTATTACATTACCTTCATCATGAATGTGAGCAAGCGGTCATTCATTGTGATCTAAAGCCAAGTAATGTCCTTCTTGATGACGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGCCATTGACAATACCTCTAACAAGGAAACTAGTACAATTGGAATTAAAGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAATATCCACATATGGTGACATGTATAGCTTCGGGGTGCTTATGTTGGAAATGCTTACCGGAAGAAGACCAACAGATGGAATGTTTGAAGAAGGTCAAAATTTGCATATGTTTGTTGGAATTTCATTTCCTAATAATATTATACAGATTTTGGATCCACATCTTGTACCAAGAAATGAAGAAGAAGAAATAGAAGAAGGAAACTGTGGAAATTTCACTCCAACTGTAGAGAAGTGTTTAGTTTCACTTTTCAGGATTGGACTTGCTTGTTCAGTGAAATCACCAAAAGAAAGAATGAACATAGTTAATGTCATGAGAGAGTTAGGCATGATAAAAAAGGCCTTTCTTTCTGGTGGGGTTTGA	3042	0.359	MFPTFSFWLSLLFTLNFVQNTITSTLGNKTDYLALLKFKESISNDPYGILASWNTSNHYCNWHGITCNPMHQRVTELDLDGFNLHGVISPHVGNLSFLTNLILAKNSFFGNIPHELGQLSRLQQLVLSNNSMTGEIPTNLTSCSDLEYLFLSGNHLIGKIPIRISSLHKLQLLELTNNNLTGRIQPSIGNISSLTIISMDMNHLEGDIPQEMCSLKHLTKITVFSNRLSGTFHSCFYNMSSLTYISVTLNKFNGSLPSNMFNTLSNLQCFYIASNQFSGTIPISIANASSLKELDLSDQNNLLGQVPSLGNLHDLQRLNLEFNNLGDNTTKDLEFLKTLTNCSKLTVISIAYNNFGGNLPNFVGNLSTQLSQLYVGGNQMSEKIPAELGNLIGLIHLSLEYNHFEGIIPTTFGKFERMQRLVLNGNRLSGMIPPIIGNLTHLFFFSVGDNMLEGNIPSSIGYCQKLQYLDLSQNILRGTIPIEVLSLSSLTNILNLSNNTLSGSLPREVGMLRNINELDISDNYLSGEIPRTIGECIVLEYLSLQGNSFNGTIPSTLASLKGLQYLDLSRNRLYGPIPNVLQSISVLEHLNVSFNMLEGEVPKEGVFGNISRLVVTGNDKLCGGISELHLQPCLAKDMKSAKHHIKLIVVIVSVASILLMVTIILTIYQMRKRNKKQLYDLPIIDPLARVSYKDLHQGTDGFSARNLVGLGSFGSVYKGNLASEDKVVAIKVLNLQKKGSHKSFVVECNALKNMRHRNLVKVLTCCSSTDYKGQEFKALVFEYMNNGNLEQWLHPGIMNAGIQRMLDLDQRLNIIVDIASVLHYLHHECEQAVIHCDLKPSNVLLDDDMVAHVSDFGIARLVSAIDNTSNKETSTIGIKGTVGYAPPEYGMGSEISTYGDMYSFGVLMLEMLTGRRPTDGMFEEGQNLHMFVGISFPNNIIQILDPHLVPRNEEEEIEEGNCGNFTPTVEKCLVSLFRIGLACSVKSPKERMNIVNVMRELGMIKKAFLSGGV*	1014

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g1069	1013	Gene3D	Ribonuclease Inhibitor	223	332	IPR032675	-
	Mtr5g1069	1013	PANTHER	LRR RECEPTOR-LIKE KINASE	18	1010	-	-
	Mtr5g1069	1013	SUPERFAMILY	L domain-like	368	623	-	-
	Mtr5g1069	1013	ProSiteProfiles	Protein kinase domain profile.	702	1009	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr5g1069	1013	Pfam	Leucine rich repeat	539	597	IPR001611	GO:0005515
	Mtr5g1069	1013	SUPERFAMILY	L domain-like	30	325	-	-
	Mtr5g1069	1013	PANTHER	OS04G0122200 PROTEIN	18	1010	-	-
	Mtr5g1069	1013	Gene3D	Ribonuclease Inhibitor	333	642	IPR032675	-
	Mtr5g1069	1013	SMART	serkin_6	702	1009	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr5g1069	1013	Gene3D	Ribonuclease Inhibitor	141	222	IPR032675	-
	Mtr5g1069	1013	Gene3D	Ribonuclease Inhibitor	30	140	IPR032675	-
	Mtr5g1069	1013	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	833	845	IPR008271	GO:0004672\|GO:0006468
	Mtr5g1069	1013	ProSitePatterns	Protein kinases ATP-binding region signature.	708	731	IPR017441	GO:0005524
	Mtr5g1069	1013	Pfam	Protein kinase domain	705	933	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr5g1069	1013	Pfam	Leucine rich repeat N-terminal domain	29	68	IPR013210	-
	Mtr5g1069	1013	Gene3D	Transferase(Phosphotransferase) domain 1	784	1009	-	-
	Mtr5g1069	1013	Gene3D	Phosphorylase Kinase; domain 1	683	783	-	-
	Mtr5g1069	1013	SUPERFAMILY	Protein kinase-like (PK-like)	677	1001	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g1069	Mtr-Chr5	10671618	10674954	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g1069	28	1011	Receptor kinase-like Gene Family	AT3G47570	44.076	0.0	806

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Mtr5g1069		Pkinase	1.2e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g1069	-		-	gmx:100785561	1290.02