Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1064 ATGGAAGATAATCATTTGGAAGGAATGATTCCATCTACTTTTAAGAATTTTCAAAGGATACAAAAGTTAAGATTGGAAGGAAACAGGTTATTCGGGGATATACCAGCCTTCATAGGAGACCTCACTCAATTGTATTTTTTGAGATTAGACAGAAATATATTAGAAGGGAGTATTCCTCCAAATATAGGAAATTGTCAAAAGTTACAATACCTAGACTTTTCACAAAACAACCTTAGAGGGTCCATACCTTTAGATATTTTTAGTATTTCCTCTTTGACAAATTTACTTGACTTGTCACGAAACAAATTGAGTGGTAGCTTACCAAAAGAAGTGGGTATGCTAAAAAATATTGATTGGTTAGATGTCTCTGAAAATCATTTGTGTGGGGAGATTCCTGGAACTATTGGTGAATGCATAAGCTTAGAATACCTTCGTTTGCAAGGGAACTCATTCAACGGAACAATACCATCCTCTTTTGCTTCTCTCAAAGGTCTACAATATTTAGATATTTCAAGAAATCAATTGTATGGACCAATTCCTGATGTTTTGCAGAATATCTCTAGCTTAGAACACTTGAATGTTTCCTTTAACATGTTGGAAGGTGAGGTGCCAACAAACGGTGTCTTTCGAAATGCAACCCAAGTAGCAATGATCGGAAATTATAAGCTTTGTGGAGGAATTTCACAGTTGCATCTACCACCATGCTCTGTCAAGCGTTGGAAGCACACAAAAAATCATTTTCCCAGGTTGATAGCAGTGATAGTTGGTGTGGTGTCTTTTCTTTTCATACTTTCAGTTATCATAGCTATCTATTGGGTGAGGAAAAGAAACCAAAACCCATCTTTTGATTCACCAGCAATTCATCAACTAGATAAGGTTTCATACCATGACTTACACCAAGGAACCGATGGGTTCTCGGATAGAAACTTGATTGGATTAGGAAGTTTTGGTTCTGTGTACAGAGGAAATCTTGTGTCAGAAGATAATGTAGTTGCTGTAAAGGTCCTGAACCTCCAAAAGAAGGGAGCACACAAGAATTTCATTGTTGAATGTAATGCACTCAAAACTATAAGACACCGGAATTTAGTTCAAGTTTTAACATGTTGTTCTAGTACAGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTTAAATGCAGAGCCTCCAACAACGTTGGACCTTGGTAAAAGATTTAACATCATTTTTGATGTTGCTTCTGCATTGCATTATCTTCATCAAGAATGTGAGCAATTAGTCATTCATTGTGATCTAAAGCCAAGCAATGTCCTACTTGATGATGATATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTGGTCTCGTCCATTGGTGGTACCTCTCATATAAATACTAGTACAATTGGGATAAAAGGAACTGTTGGATATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCTATATGTGGTGACATGTATAGCTTTGGAATCCTGATGTTGGAAATACTTACTGGTAGGAGACCCACTGATGAAGTTTTTCAAGATGGTCAAAATCTGCATAACTTTGTTGCAACTTCATTTCCTGATAATATTAAAGAGATTTTGGACCCACACCTTGTAACAAGAGATGTAGAAGTAGCAATAGAAAATGGAAACCATACGAATCTTATTCCAAGGGTAGAGGAATCCTTAGTTTCACTTTTTAGAATTGGACTTATTTGTTCAATGGAATCACCGAAAGAAAGAATGAATATTATGGATGTTACTAAAGAGCTTAACACAATCCGGAAGGCCTTTCTCGCTGGTTTTTGCACACCTTGTAATTAA 1863 0.365 MEDNHLEGMIPSTFKNFQRIQKLRLEGNRLFGDIPAFIGDLTQLYFLRLDRNILEGSIPPNIGNCQKLQYLDFSQNNLRGSIPLDIFSISSLTNLLDLSRNKLSGSLPKEVGMLKNIDWLDVSENHLCGEIPGTIGECISLEYLRLQGNSFNGTIPSSFASLKGLQYLDISRNQLYGPIPDVLQNISSLEHLNVSFNMLEGEVPTNGVFRNATQVAMIGNYKLCGGISQLHLPPCSVKRWKHTKNHFPRLIAVIVGVVSFLFILSVIIAIYWVRKRNQNPSFDSPAIHQLDKVSYHDLHQGTDGFSDRNLIGLGSFGSVYRGNLVSEDNVVAVKVLNLQKKGAHKNFIVECNALKTIRHRNLVQVLTCCSSTDYKGQEFKALVFDYMKNGSLEQWLHPEILNAEPPTTLDLGKRFNIIFDVASALHYLHQECEQLVIHCDLKPSNVLLDDDMVAHVSDFGIARLVSSIGGTSHINTSTIGIKGTVGYAPPEYGMGSEVSICGDMYSFGILMLEILTGRRPTDEVFQDGQNLHNFVATSFPDNIKEILDPHLVTRDVEVAIENGNHTNLIPRVEESLVSLFRIGLICSMESPKERMNIMDVTKELNTIRKAFLAGFCTPCN* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1064 620 SUPERFAMILY Protein kinase-like (PK-like) 278 604 IPR011009 -
Mtr5g1064 620 Gene3D Phosphorylase Kinase; domain 1 286 386 - -
Mtr5g1064 620 Gene3D Transferase(Phosphotransferase) domain 1 387 613 - -
Mtr5g1064 620 Pfam Protein kinase domain 307 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1064 620 Gene3D Ribonuclease Inhibitor 1 243 IPR032675 -
Mtr5g1064 620 PANTHER LRR RECEPTOR-LIKE KINASE 1 613 - -
Mtr5g1064 620 SUPERFAMILY L domain-like 3 225 - -
Mtr5g1064 620 SMART serkin_6 305 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1064 620 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
Mtr5g1064 620 ProSitePatterns Protein kinases ATP-binding region signature. 311 334 IPR017441 GO:0005524
Mtr5g1064 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Mtr5g1064 620 PANTHER OS04G0122200 PROTEIN 1 613 - -
Mtr5g1064 620 ProSiteProfiles Protein kinase domain profile. 305 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1064 Mtr-Chr5 10623854 10626144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1064 1 611 Receptor kinase-like Gene Family AT3G47570 45.338 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr5g1064 Pkinase 2.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1064 - - mtr:MTR_5g025930 1237.63