Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1062 ATGAAGCCTTATATTTTGATGTTACCTATGTCTTGGTATGTATACCTTCATCTCTTTACCTTAGCCTTAATGTGGTTTGGCCCAAACAGAACTGTGGCAGTGGCACTAGGAAACCAAACCGATCATTTGGCATTGCTCCAATTCAAGCAATTAATATCTAGTGACCCATATGGTATCCTAAATAAATGGAATAGTTCAACTCACTTTTGCAACTGGAATGGAATCATATGCAGTCCCAAGCATCAAAGAGTTACCAAGTTGAAGCTGTCAGGATACAAGTTGCATGGATCCATATCTCCATATATTGGTAATCTTTCTCGTTTGAGATTTCTTAACCTTGAAAACAACAATTTCAATGGAAACATTCCACAAGAGTTGGGTCGTTTGTCAAGATTAAGATATTTTCTTCTATCCAACAACTCTCTGGTTGGAGAATTTCCTTTAAACTTGACAAACTGCTCTGAGCTCAAAAGCGTAGACTTAGAAGGAAACAAACTTTTTGGAAAAATACCTAGCCAATTTGGCTCTCTTCAAAAGCTTCACATTTTCTATATCGGAACAAACAATTTATCTGGAAAAATCCCACCATCCATAAGGAATCTTTCATCTCTTAATATTTTTTCAATTGGTTATAATAACTTGGTAGGAAATATTCCACGTGAAATTTGCTTCTTAAAACAGTTGAAGTTTATAGCAGTGCATGCCAACAAATTGTCTGGTACATTTCTTTCTTGTCTTTATAATATGTCATCTCTTACGGGGATCTCAGTTGCAGCGAATAGCTTTAGTGGCTCTCTTCCGCCCAATATGTTCAACACTCTCCCTAACCTCTATTTCTATGGAATTGGAGGAAATCAATTCTCTGGTCCAATCCCAACTTCCATTGCAAATGCTTATACTTTGATAAGGTTTGATATTGGTGGTAACCATTTTGTCGGACAAGTTCCATGTCTAGGGAAGCTACAGAAACTTTGGTCGCTAAGTTTGCAAGATAACAAATTAGGTGACAATTCCAGTAAGGATTTAGAGTTTTTAAAATCATTAGCAAATTGTAGCCAGTTGTACTCTCTCTCTGTAACCAACAACAATTTTGGAGGTAGTTTGCCAAATTTGATAGGTAACTTATCCCCTGGACTAAGTGAATTATATATTGGGGGTAATCAAATATATGGTAAAATTCCTATAGAATTAGGAAATCTAACTAGCTTGATTCTCTTAACCATGGAAGATAATCGTTTAGAAGGAACGATTCCAAAAACTTTTAGGATGTTTCAAAAGATACAATACTTAGGATTGGGAGGAAACAGGTTATCAGGGGATATACCGGCCTTCATAGGAAACCTCAGTCAGTTGTTTGTTTTGCGTATGGAAGAAAATTTATTAGAAGGGAATATTCCTCTAAGTATAGGGGAATGCCAAAAGTTGCAATTTTTAAACCTGTCACTAAACAACCTTCGAGGAGCCATACCCTTAGAAATTTTTAGAATTTATTCCTTAACAAAGGGATTGGACTTGTCACAAAATTCATTGAGTGGTAGTTTACCTGATGAAGTAGGTTTGCTAAAAAATATAGGTACAATAGATGTCTCTGAAAATCATCTCTCAGGTGGCATTCCAGGAACCATTGGGGATTGCATAAACTTAGAATACCTTCATTTGCAAGGAAACCTTTTCCTCGGAACAATACCTTTCACTTTGGCATCTCTCAAAGGTCTTCAATATTTAGACATGTCAAGAAATCAGTTGTCTGGATCAATTCCTACAAGTTTGCAGAATATTGTTTTCCTAGAATACTTCAATGTATCTTTCAACATGTTGGAAGGTGAGGTTCCAATGAAAGGTGTCTTTCAAAATGCAAGCAGGTTAGCAATGATTGGAAACAATAAGCTTTGTGGAGGAGTTTTAGAGCTGCATCTACCGCCATGCCCTATCAAAGTTATAAAACCTACAAAACACCTCAAGTTGAAGTTGGTAGCAGTGATAATTAGTGTCATTTTCATTATTATACTGATATTTATTCTAACCATCTACTGGGTAAGGAAAAGAAACATGAAATTATCTTCTGATACACCTACAACTGACCAGCTAGTTAAGGTTTCATACCAAGAACTACATCAAGGAACTGATGGATTCTCAGATGGAAACTTGATTGGATCAGGAAGTTTTTGTTCCGTATACAAAGGAATTCTCGTATCACAAGATAAATCTGTTGCTATCAAGGTTCTGAACCTTAAAAAGAAGGGAGCTGATAAGAGTTTTATTGCCGAATGTAATGCACTCAAGAATGTTAGACATCGAAATTTGGCCAAGATTTTAACATGTTGTTCTGGTACTGATTATAAAGGTCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGTTTAGAACAATGGCTTCATCCATGGAATGTGAATTCAGAGCATCCAAGAACGTTGGACCTTGTTCATAGATTAAATATCACTATCGATATTGCTTCTGCACTACATTATCTTCATCATGAATGTGAGCAGGTGGTCCTTCATTGTGATATAAAGCCAAGCAACGTCCTTCTTGACGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAGTTATTGAAGACACATCTCATCAGGAAACTAGTACAATTGGAATTAAAGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTATCCACATCTGGTGACATGTATAGCTTTGGGATGCTTATGTTGGAAATGATCACCGGAAGAAGACCCACAGATGAAATGTTTGAAGATGGTCAAAATCTACATATGTTTGTTGAAAGTTCATTTCAAGATAATCTTATACAGATTTTGGACCCACATCTTGTTTCAATAGAAGATGGACATAATGAGAATCTTATTCCAGCTAAGGAGAAGTGCTTAGTTTCACTTCTAAGGATTGGACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAGCATAATAGATGTTACAAGAGAGCTAAATATAATCAGAACGGTCTTTGTTGATGGCGAGACAAACTAA 3054 0.3631 MKPYILMLPMSWYVYLHLFTLALMWFGPNRTVAVALGNQTDHLALLQFKQLISSDPYGILNKWNSSTHFCNWNGIICSPKHQRVTKLKLSGYKLHGSISPYIGNLSRLRFLNLENNNFNGNIPQELGRLSRLRYFLLSNNSLVGEFPLNLTNCSELKSVDLEGNKLFGKIPSQFGSLQKLHIFYIGTNNLSGKIPPSIRNLSSLNIFSIGYNNLVGNIPREICFLKQLKFIAVHANKLSGTFLSCLYNMSSLTGISVAANSFSGSLPPNMFNTLPNLYFYGIGGNQFSGPIPTSIANAYTLIRFDIGGNHFVGQVPCLGKLQKLWSLSLQDNKLGDNSSKDLEFLKSLANCSQLYSLSVTNNNFGGSLPNLIGNLSPGLSELYIGGNQIYGKIPIELGNLTSLILLTMEDNRLEGTIPKTFRMFQKIQYLGLGGNRLSGDIPAFIGNLSQLFVLRMEENLLEGNIPLSIGECQKLQFLNLSLNNLRGAIPLEIFRIYSLTKGLDLSQNSLSGSLPDEVGLLKNIGTIDVSENHLSGGIPGTIGDCINLEYLHLQGNLFLGTIPFTLASLKGLQYLDMSRNQLSGSIPTSLQNIVFLEYFNVSFNMLEGEVPMKGVFQNASRLAMIGNNKLCGGVLELHLPPCPIKVIKPTKHLKLKLVAVIISVIFIIILIFILTIYWVRKRNMKLSSDTPTTDQLVKVSYQELHQGTDGFSDGNLIGSGSFCSVYKGILVSQDKSVAIKVLNLKKKGADKSFIAECNALKNVRHRNLAKILTCCSGTDYKGQEFKALVFDYMKNGSLEQWLHPWNVNSEHPRTLDLVHRLNITIDIASALHYLHHECEQVVLHCDIKPSNVLLDDDMVAHVSDFGIARLVSVIEDTSHQETSTIGIKGTVGYAPPEYGMGSEVSTSGDMYSFGMLMLEMITGRRPTDEMFEDGQNLHMFVESSFQDNLIQILDPHLVSIEDGHNENLIPAKEKCLVSLLRIGLACSMESPKERMSIIDVTRELNIIRTVFVDGETN* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1062 1017 Gene3D Phosphorylase Kinase; domain 1 675 792 - -
Mtr5g1062 1017 SUPERFAMILY Protein kinase-like (PK-like) 683 1004 IPR011009 -
Mtr5g1062 1017 PANTHER LRR RECEPTOR-LIKE KINASE 26 1013 - -
Mtr5g1062 1017 Pfam Protein kinase domain 712 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1062 1017 Gene3D Ribonuclease Inhibitor 38 318 IPR032675 -
Mtr5g1062 1017 Gene3D Transferase(Phosphotransferase) domain 1 793 1013 - -
Mtr5g1062 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 842 854 IPR008271 GO:0004672|GO:0006468
Mtr5g1062 1017 ProSiteProfiles Protein kinase domain profile. 711 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1062 1017 Gene3D Ribonuclease Inhibitor 334 646 IPR032675 -
Mtr5g1062 1017 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Mtr5g1062 1017 Pfam Leucine rich repeat N-terminal domain 39 78 IPR013210 -
Mtr5g1062 1017 SMART serkin_6 711 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g1062 1017 SUPERFAMILY L domain-like 379 632 - -
Mtr5g1062 1017 SUPERFAMILY L domain-like 39 334 - -
Mtr5g1062 1017 PANTHER OS04G0122200 PROTEIN 26 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1062 Mtr-Chr5 10607945 10611229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1062 38 1011 Receptor kinase-like Gene Family AT3G47570 45.740 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr5g1062 Pkinase 4.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1062 - - mtr:MTR_5g025930 1399.8