Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1033 ATGGCAACAATGGGTGGTGAGACCTTGAAGGCCCATCTGGGTATGGTAGTTGTACAGCTTTTCAATGGTGGATACTATGTTATTACTAAAGTAGCCCTCAATTCTGGAGTCAATCAATTAGTCTTCTGCTTCTATAGAGATCTCATTGCCCTTCTCATTCTTTCTCCCATTGCTTTTTTCAAAGAAAGACAGACAAGGCCACCCATTACTAAGCAGCTATTCATGTCATTCTTCTTTCTTGGATTAATTGGGATATTTGGCAGCCAGGTGTTGTTTCTTTATGGTTTAGGTTATACAAATCCAACTTATGCCTCTGCCTTACAGCCTTCTATTCCTGTCTTTACCTTTCTACTTGCTGTCATCATGGGTGTAGAAAGAGTGAATCTGCAGAGTTTTGAAGGTCTGACAAAGGTTGGAGGGACTGTTATATGTGTTTCTGGTGCCATATTTATGGCTTTGTACCGCGGTCCATCGTTGATAGGATATAACGAACCAGTGATCATACCACATAATGAAATAATTGTCAGTGGTCAGCCAGAGCCTTTTGGTTTTGGATGGTTGATTACTGGTTTACTGAATCTTGGATCAGAAAATTTCGAACTTGGAGTTATGTTCTTGATAGGTAACTGCACGTGCTTGGCTGCTTTCCTAGCCATTCAGGCGCCGGTACTAAAAAAGTATCCTGCATATTTATCTGTGACAGCATTTTCATTCTTCTTTGGCGTTGTACTAATGGCGATAGTCTCCTTATTCACGACTAATTTGTCATCTGACTGGATTTTGACACAATCAGAAATACTTGCGGTTGTTTATGCTGGAAGTATTACATCTGCCTTTAATTATGCAGTCATGAGTTGGAGCAACAAGATATTAGGGCCAACTCTGGTTGCCCTTTACATTCCACTTCAACCTGGATTTGCTGCCATATTGTCTCAGATATTCCTTGGAAGTCCAATTTACTTGGGAAGTATAATAGGGGGGTCTTTGATCATTGTTGGACTTTATACTGTTACCTGGGCATCTTTTAAACAAAGACAGGCAACTGTTGGAACTACTTCTCACGACTCTTGGATCTCTGAACCACTTATTATTCATGAAAAAAGTTCACACCATAGAGGTAATATATTTTCGGGGCATGAATCATAG 1146 0.4014 MATMGGETLKAHLGMVVVQLFNGGYYVITKVALNSGVNQLVFCFYRDLIALLILSPIAFFKERQTRPPITKQLFMSFFFLGLIGIFGSQVLFLYGLGYTNPTYASALQPSIPVFTFLLAVIMGVERVNLQSFEGLTKVGGTVICVSGAIFMALYRGPSLIGYNEPVIIPHNEIIVSGQPEPFGFGWLITGLLNLGSENFELGVMFLIGNCTCLAAFLAIQAPVLKKYPAYLSVTAFSFFFGVVLMAIVSLFTTNLSSDWILTQSEILAVVYAGSITSAFNYAVMSWSNKILGPTLVALYIPLQPGFAAILSQIFLGSPIYLGSIIGGSLIIVGLYTVTWASFKQRQATVGTTSHDSWISEPLIIHEKSSHHRGNIFSGHES* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1033 381 Pfam EamA-like transporter family 11 136 IPR000620 GO:0016020|GO:0016021
Mtr5g1033 381 Pfam EamA-like transporter family 201 338 IPR000620 GO:0016020|GO:0016021
Mtr5g1033 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 343 - -
Mtr5g1033 381 PANTHER WAT1-RELATED PROTEIN 10 378 IPR030184 GO:0016021|GO:0022857
Mtr5g1033 381 PANTHER NODULIN MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN 10 378 - -
Mtr5g1033 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1033 Mtr-Chr5 10312365 10317467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1033 95 370 Nodulin-like Gene Family AT5G45370 57.857 8.35e-110 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1033 - - mtr:MTR_5g025330 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1033 5 10312365 10317467 Mtr8g2275 8 33040607 33045168 PCT