Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1008 ATGAGTGATACAAATGAAAACGATGAAGTGGATCAGGGTGTTCCGGCGAATGTTGATGTAGAGGAAGCTGACCATGTCATTAGTGAAAATGAAAATTCAAATCAAGCTTCAGTTAGTCCAAAATTAGGAGATGATGATGAGATGATTATTGATAATCTTGCTGGTTTGGATTCATATCTTGATCAAGAGATGCATCTTGAAGTTCAACCGGTTACTGTAGAGGAAACTTCAAAGAATGTTGAAAATGTGTCAAATGATGTTAAAATTGGGAAGGAAGAGGTGCATGCTGAGGATGAAAATGTGAAACCCAAGGTTGTTTCAGAAGGTGTTTCACAAGAAAATGTTAAAGATACCCTTCATTCGGTTCCAGTTGAAGCGGCTGATGCTCATATTTTGGATACAGCTGAGGGTGAAGATGCTTCTGATGTGAAGGTGGACGCCAAAAAACTTCCTCTGTGTAGCAACGGTGTTGAGAATGATGATATTGCATGTCAAAATAATGTTAGTGATGGTGATGTTGAAATGATAGCGGTGGAGGTTGAGGTGAAGCCTGAAGTCTGTGAAGCGGCTGTTAGTAAAGCTTGTGATCTTGAACCTATATTGTTGAGTAATAACAATCCTACTACACCACAACCTGCCTCTTCTGATGCAAATGAACCTATACTGTCAAATCATAATGATCCTACTACACCACAACCTGCCTCTTCTGATGCAAATGAACCTATACTGTCAAATCATAATGATCCTACTACACCACAACCTGCCCCTGATGATACAAGGCCAGAAATCAAGAATGTTTTAGAAGTTAAAAGTAAGGATGGTGAAGAGCAAGTTGCTGAGCCTGTAGATAATGAAAACCCAGATTCACCGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGACGGAAATGAGTCGGGAACAGAAGAGGACCAAGCAGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGACTTCAAACATCCCAAATTTTATGGAGAATGGCTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGATTGGGAGGCTATGAGAAGGTAACCTCATGTAAGCTGTGGCGGAGTGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGAGGATTTTATGAGAAGGCCCTTCTTGATTATGAAAGGCATAACATAAAAGGCGGCGAGCTGAATGTACCTATCGCTTCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAGAGCATCAATGTACCTAAACGTAAGAGCCCATCTTATATGGATAATGCAGTCAAAGCAGCACGGAGTAAACCGTCAAGACCACAGTTGGGAACAGCTGTGGTTGACATAGGACCTTCTGCTGATTGGGTAAAAGTCAATGTTCAAAAAACTAAAGATTGTTTCGAAATATATGCTTTAGTTCCTGGCCTTCTGCGGGAGGAGGTACGTGTTCAATCAGACCCAGCAGGACGTTTGGTCATAAGCGGCGAGCCTGAGCATCCCAATAATCCTTGGGGCGTGACACCTTTCAAAAAGGTTGTGAGTTTACCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAACTGTTTGTCCGTGTGCCATTTGAACAGTCAGAATAG 1707 0.42 MSDTNENDEVDQGVPANVDVEEADHVISENENSNQASVSPKLGDDDEMIIDNLAGLDSYLDQEMHLEVQPVTVEETSKNVENVSNDVKIGKEEVHAEDENVKPKVVSEGVSQENVKDTLHSVPVEAADAHILDTAEGEDASDVKVDAKKLPLCSNGVENDDIACQNNVSDGDVEMIAVEVEVKPEVCEAAVSKACDLEPILLSNNNPTTPQPASSDANEPILSNHNDPTTPQPASSDANEPILSNHNDPTTPQPAPDDTRPEIKNVLEVKSKDGEEQVAEPVDNENPDSPQNMFFLDADHYYDGNESGTEEDQAAFMKELENFFRERSMDFKHPKFYGEWLNCLKLWRAVMRLGGYEKVTSCKLWRSVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELNVPIASPPEPVNVENQDRNAVSVQKREKQLKSINVPKRKSPSYMDNAVKAARSKPSRPQLGTAVVDIGPSADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1008 568 Gene3D - 310 407 IPR036431 GO:0003677
Mtr5g1008 568 MobiDBLite consensus disorder prediction 85 104 - -
Mtr5g1008 568 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 422 567 IPR045147 GO:0006357
Mtr5g1008 568 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 63 423 IPR045147 GO:0006357
Mtr5g1008 568 MobiDBLite consensus disorder prediction 203 291 - -
Mtr5g1008 568 MobiDBLite consensus disorder prediction 261 279 - -
Mtr5g1008 568 SMART bright_3 311 402 IPR001606 GO:0003677
Mtr5g1008 568 CDD ACD_sHsps-like 483 563 - -
Mtr5g1008 568 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 422 567 - -
Mtr5g1008 568 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 63 423 - -
Mtr5g1008 568 MobiDBLite consensus disorder prediction 71 114 - -
Mtr5g1008 568 MobiDBLite consensus disorder prediction 1 45 - -
Mtr5g1008 568 Pfam ARID/BRIGHT DNA binding domain 313 397 IPR001606 GO:0003677
Mtr5g1008 568 ProSiteProfiles ARID domain profile. 310 401 IPR001606 GO:0003677
Mtr5g1008 568 Gene3D - 470 568 IPR008978 -
Mtr5g1008 568 CDD ARID 312 397 - -
Mtr5g1008 568 SUPERFAMILY ARID-like 303 411 IPR036431 GO:0003677
Mtr5g1008 568 MobiDBLite consensus disorder prediction 203 253 - -
Mtr5g1008 568 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 468 568 IPR002068 -
Mtr5g1008 568 SMART ARID_2 307 397 - -
Mtr5g1008 568 SUPERFAMILY HSP20-like chaperones 476 564 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1008 Mtr-Chr5 10095759 10103904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1008 305 566 ARID Transcription Factor Family AT1G76510 53.311 4.62e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr5g1008 HSP20 2.5e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1008 - - cam:101506818 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1008 5 10095759 10103904 Mtr5g1008 5 10095759 10103904 ECH