Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g1001 ATGACTCGACCGCTAAGAATTCTCCTTTCAATGGAAACCACACCCACCACCGTAGTGGTGGCACCGCCACCGGAAGCCGTAGCTATAGAATCAGATTTCGTTGTAATTCTCGCAGCTTTACTCTGTGCTTTAATATGTGTTGTTGGACTCATCGCCGTCGCTCGTTGTGCTTGGCTCCGACGAGACTCCGGCGCCGGAAACTCACCTCAACAAGCTTTAGCCAACAAAGGACTCAAGAAAAAAGTTCTACAATCACTTCCCAAATTCTCTTACGTCGATAGCAACCCTGGAAAATGGTTAGCAACAACAGAATGCGCGATTTGTCTCTCGGATTTCGCCGCCGGCGATGAGATCCGTGTTCTTCCACAGTGTGGACATGGTTTTCACGTGGCTTGTATTGATACATGGCTTGGGTCACACTCATCTTGTCCTTCTTGTAGGCAGATTCTGGCGGTGACGAGGTGTCAGAAGTGTGGTAGGTTTCCGGCGAACGGAGGTGAAGCTACCGGAGTTACGGTTAGTGAACCGGAGATGAAAAGTAGAGAAGATAGCAATGTCGGTGCAAATAGTAATAGTGGGGGTGTTAGTAGTTGTAGTAATAACTCTGCACATCACAATCATAGTGGAAACAGTGGGTTCTTGCCTTAA 648 0.4799 MTRPLRILLSMETTPTTVVVAPPPEAVAIESDFVVILAALLCALICVVGLIAVARCAWLRRDSGAGNSPQQALANKGLKKKVLQSLPKFSYVDSNPGKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPANGGEATGVTVSEPEMKSREDSNVGANSNSGGVSSCSNNSAHHNHSGNSGFLP* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g1001 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 183 - -
Mtr5g1001 215 MobiDBLite consensus disorder prediction 166 215 - -
Mtr5g1001 215 Pfam Ring finger domain 104 147 IPR001841 -
Mtr5g1001 215 MobiDBLite consensus disorder prediction 183 215 - -
Mtr5g1001 215 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Mtr5g1001 215 CDD RING-H2_PA-TM-RING 104 147 - -
Mtr5g1001 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 183 - -
Mtr5g1001 215 SMART ring_2 105 146 IPR001841 -
Mtr5g1001 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Mtr5g1001 215 SUPERFAMILY RING/U-box 84 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g1001 Mtr-Chr5 9960633 9961830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g1001 1 183 C3H Transcription Factor Family AT1G76410 58.639 9.93e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g1001 - - gmx:100787383 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1001 5 9960633 9961830 Mtr8g2297 8 33356503 33357481 PCT