Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0992 ATGGGTATTGTTTCTTGGTTGATAAAGAATCAAGTTTTGGTTTCAGGGACTAATGTGTTCTGTCAGGGCAGTAACAAAGTTGTCAAAAGAGGAAGTTTGTTTTCTGATGCTATAGTTTGTGATTGTTGTCATGTTACCTTTACTATCACCGGGTTCGAGTCTCATGCTGGTTGTACAAGACATAGACCATCCACTAGTATCTTGTTGGAAGATGGAAGATCGTTGTTGGATTGTCAAAGGGAAGCTCTGAGTTCGAGTGATCATAAAGGGAATCATTCTGTTGTCAACGAAAATCAAAAGAAGAATCATTCTATTGTCAAAGAAAATCGAAAGAAGAATCATTGTGTTGTCAAAGAAAAATCTGAAGCAAATAATGATAATGTTTGTTCTATTTGTGGTTTTGGAGGTGACTTAGCACTATGTGATCGATGCCCTTCTGCATTCCACCTAGGTTGTTTAGGTCTCAATCGAGTTCCAATTGGTGAATGGTTCTGTCCAACTTGTTGTTGCAAAATATGCTATCGACCCAAATGCAAACAAGAATGTAAAGATCACAAGGATAACAATATTCTTGTTTGTGTTCAATGTGAGCAAAAATATCACTTTGGATGTGTAAAGGCTGTAGGAATTGAATTTAATCACATGGAGAATTGGTTTTGCAGTGTGGTTTGTGGGAACATGTTCTTATGTCTAAAGAAGTTGTTAGGAAAACCAATTAAGGTTGCAGATAATTTAACATGGACATTGGTGAAGAATGTGAGTAGTGTTGATGACAAGGAGTTTAATCAAAAGGAGAGTAAGTTGAATATGGCTCTTGGTGTATTGTATGAGGGTTTTAATCCAACTTTTGATGCTTTATCAGGAAGAGAGTTGATTAAAGATGTTGTTTTTAGCAGAGAATCAGAACACAATCGCTTAAACTTTTGTGGTTTCTATAATGTAATTTTGGAGAAAATGGGTGAAGTGATTTCAGTGGCAACTGTAAGGATTTATGGTCAAAAGGTTGCAGAGGTAGTTTTCGTGGCCACCAAGGAACAATATCGACGACAAGGAATGTGTCATTTGTTGATGGATGAGATTGAGAAACAGTTAACTCGCTTAGGAGTTGAGAAATTACTTCTGCATTCCTCAGAGGATGCTATGAACACTTGGACAAGATCATTTGGTTTTGCCAGGATGGCCAGTAAAGATAAGTGTCAGTTTATTGATCATACTTTTTTAGAATTTCAGAATAGTACCATGTGTCTCAAAGCACTGAAAACACCTAAATGGCCTTGCATTGCTTGA 1287 0.3683 MGIVSWLIKNQVLVSGTNVFCQGSNKVVKRGSLFSDAIVCDCCHVTFTITGFESHAGCTRHRPSTSILLEDGRSLLDCQREALSSSDHKGNHSVVNENQKKNHSIVKENRKKNHCVVKEKSEANNDNVCSICGFGGDLALCDRCPSAFHLGCLGLNRVPIGEWFCPTCCCKICYRPKCKQECKDHKDNNILVCVQCEQKYHFGCVKAVGIEFNHMENWFCSVVCGNMFLCLKKLLGKPIKVADNLTWTLVKNVSSVDDKEFNQKESKLNMALGVLYEGFNPTFDALSGRELIKDVVFSRESEHNRLNFCGFYNVILEKMGEVISVATVRIYGQKVAEVVFVATKEQYRRQGMCHLLMDEIEKQLTRLGVEKLLLHSSEDAMNTWTRSFGFARMASKDKCQFIDHTFLEFQNSTMCLKALKTPKWPCIA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0992 428 ProSiteProfiles Zinc finger PHD-type profile. 126 171 IPR019787 -
Mtr5g0992 428 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 274 412 IPR000182 GO:0016407
Mtr5g0992 428 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 3 423 - -
Mtr5g0992 428 SUPERFAMILY FYVE/PHD zinc finger 119 170 IPR011011 -
Mtr5g0992 428 Pfam Tify domain binding domain 31 82 IPR032308 -
Mtr5g0992 428 CDD NAT_SF 314 375 - -
Mtr5g0992 428 Gene3D - 248 415 - -
Mtr5g0992 428 SMART PHD_3 177 224 IPR001965 -
Mtr5g0992 428 SMART PHD_3 128 169 IPR001965 -
Mtr5g0992 428 Pfam Acetyltransferase (GNAT) family 299 390 IPR000182 GO:0016407
Mtr5g0992 428 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 3 423 - -
Mtr5g0992 428 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 299 404 IPR016181 -
Mtr5g0992 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0992 Mtr-Chr5 9839324 9840610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0992 3 367 PHD Transcription Factor Family AT5G58610 40.209 7.35e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr5g0992 Acetyltransf_1 1.2e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0992 - - mtr:MTR_5g024390 900.968