Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0977 ATGCCGAAAGCTGTTTCCGACGCCAAACCTGCTGATAACCGGTTGAAGCGCAAGGGCGCAGGTACTGGAACCAAGCAGTCGAAGAAAGCTAAGGATCCTAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGAGGTTCAAGAAGGAGAATCCAAGCAACAAGTCCGTTGCTGTGGTTGGGAAAGCCGGTGGAAAGGAATGGAAAGCTCTGTCTGATGCTGATAAGGCTCCATTCATTGCTAAGGCTGATAAATTGAAGGAGGAGTATGAGAAAACAATGCGTGCTTACAATATGGGAATTACTGAGAAGAATGCTTCGGAGGAAGAAGGATCTGAGAAGTCCAAGTCTGAAGTGAATGATGATGATGAGGATGGTGATGATGAGGAGGATGAGGAGTAA 423 0.4657 MPKAVSDAKPADNRLKRKGAGTGTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDADKAPFIAKADKLKEEYEKTMRAYNMGITEKNASEEEGSEKSKSEVNDDDEDGDDEEDEE* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0977 140 SMART hmgende2 35 106 IPR009071 -
Mtr5g0977 140 CDD HMGB-UBF_HMG-box 36 102 - -
Mtr5g0977 140 SUPERFAMILY HMG-box 22 106 IPR036910 -
Mtr5g0977 140 Gene3D High mobility group box domain 21 125 IPR036910 -
Mtr5g0977 140 MobiDBLite consensus disorder prediction 1 42 - -
Mtr5g0977 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 137 IPR031061 -
Mtr5g0977 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 6 137 - -
Mtr5g0977 140 MobiDBLite consensus disorder prediction 107 140 - -
Mtr5g0977 140 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Mtr5g0977 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0977 Mtr-Chr5 9714661 9716132 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr5g0977 HMG_box 6.3e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0977 K25507 K22507 ahf:112797235 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0977 5 9714661 9716132 Mtr5g0977 5 9714661 9716132 ECH
Mtr5g0977 5 9714661 9716132 Mtr8g2311 8 33580497 33582047 ECH