Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0971 ATGGATTCCTCGCTCATTACCCTTCTTCTCTTCAACAACACCATTCAACCAGAGTTGATGAGAAGCGTGCATGTGTACCGTGAATGTGATGGAGGAGAAAAGGAAGTTGAAAGAGAGTTTGTGTTTTCTGAGAATGGTTCTTATGTTGAAATGAAAGCTACTCCGATTCTTAGGTTGTTGAAATCTTTTGTCTGTGAAGAGATTTTTGAAGGGTATAAGAATGGAGTTTGGCTTTGTGTTTTTGCTTTTCATGCTTATAATGTCCCTCAATTTTCTCACATTCCAACCTTTTTGTTGGTTACAAGGAATCCAAAGCTTCAGGCTATTCCAAACTTGCTCAATGATCTCCACATGATATACAAGTTGGAACCGAAGAAGGAACAAAAAAGTACACCAGAGAGCTCTGCAAGTGAAGAATTGAAAGGAAACAACAATGATTTCCAACCACCAAAAAAAGTCTTGCCTGTGCTTAATCAGGATCTCAATTGTCTTCCTTATGAAGAAGACGAGGCTGAGTTACTGGATGATGAGACAGATTTTGGAAGTTCAGCAGGGTTTTTAGGAAAGAAAAAGAGGGCAGCCAGTGACCATGTTGCAAAGATTACTTTATCAGATTTGGCCAAGTACTTTGATATGCCAATTGCAGAAGCCTCAAATAATCTAAATGTCGGGCTTACTGTTCTCAAAAGAAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCAGGAAGAGGCAAAACATCAGGAAATGGAGGATAAAGATGCAGCCATGGCAGTGATAAGAAGGCAAAAGATGTTGGAAAGTGAAAAAGAAAACATAGAGAAGAGGCCTTTCATGGACATACAAATTGAGACCAAGCGATTCAGGCAAGATATTTTCAAGAGAAGGCACAGAGCTAGAGTTATTGAAAAACAGAATCTACAGTTGCAAGCACCTAAACCTAGCAATTAG 993 0.3938 MDSSLITLLLFNNTIQPELMRSVHVYRECDGGEKEVEREFVFSENGSYVEMKATPILRLLKSFVCEEIFEGYKNGVWLCVFAFHAYNVPQFSHIPTFLLVTRNPKLQAIPNLLNDLHMIYKLEPKKEQKSTPESSASEELKGNNNDFQPPKKVLPVLNQDLNCLPYEEDEAELLDDETDFGSSAGFLGKKKRAASDHVAKITLSDLAKYFDMPIAEASNNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQEMEDKDAAMAVIRRQKMLESEKENIEKRPFMDIQIETKRFRQDIFKRRHRARVIEKQNLQLQAPKPSN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0971 330 Coils Coil 245 265 - -
Mtr5g0971 330 Pfam RWP-RK domain 200 248 IPR003035 -
Mtr5g0971 330 PANTHER PROTEIN RKD4 8 319 IPR044607 GO:0003700
Mtr5g0971 330 PANTHER PROTEIN RKD5 8 319 - -
Mtr5g0971 330 MobiDBLite consensus disorder prediction 124 152 - -
Mtr5g0971 330 ProSiteProfiles RWP-RK domain profile. 183 268 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0971 Mtr-Chr5 9652183 9655734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0971 15 313 AtRKD Transcription Factor Family AT4G35590 50.318 2.21e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr5g0971 RWP-RK 7.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0971 - - gmx:100306328 460.685