Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0963 ATGGGAGGTGACGCAACCGCTGAAACCACCACGGAGCCACAATCAACCGACGGAGGAGTTAAGATCAACATTCGTTGTTCCAATGGTTCCAAATTTTCCGTTCAGATTAGCCTCGATTCCACCGTTGTTTCCTTCAAGGATGTTATTGCTCAGAACTGCGATATTTCTGCTGATCAACAACGGTTGATTTATAAGGGAAGAATTCTTAAGGATGATCAAACGCTTCAAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTACGCCTGCCAATACAACTGGTGGGGCTAATACCACTGGTGCCAATACGACTACTACTAATGCTAGAGCTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGACCTGGACTTGGAGCTTCACTGTTTCCAGGACTAGGAGGTATCAATGGGATGGGAGGAGGTGGTGGTCTCAATAGTTTATTTGGAGCAGGGCCTCCAGATCTTGAACAATTGCAGCAACCATTTATGTCAAATCCCAATTTAGTGAGAGAAATAATGAACTCACCTGCCATGCAAAATTTATTAAATAATCCCGAGATAGTGCGCAACCTTCTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCTAGCACACTTCGCCAGACACTTGAGGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAACATTGAATCTTCTCCTGAGGGGTTTAATATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCAGGAAATGACAGTTCCAGAATTTTGGGGACTCAAGGTGGCCAAACGAGGAATCCATCGACCAATCCCTCAACTACTAATGCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTCCAACTGGAGGTGCCCAAACTAATGTCAGGAGATCAACACCTACTGCTGCAGATGCTCGGCAGCAGACACCCACTGGCTTAGGCGGGCTTGGTATGCCAGATCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGTTCATTGACCCAATTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATCATGTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAATACTGATCAGCGTGGGATGCCTGATATGAATTCAATGAGAGAAGTGATGCAAAACCCGGAGTTTCTTCGAATGTTTTCCTCACCCGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAACTTGGACAGCAGCAATCAACACAGGAACCAGGCCAAACAGGTGGAGGCACTGGACCAGTGAACAACTTGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCTCCAGAGACATTGTATGCTACCCAGCTTACCCAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACTTAAGGGCTCTTATTGCTACATCAGGGAATGTTCATGCAGCGGTTGAGCGACTTTTGGGAAACTCTGGACAGTAG 1629 0.4604 MGGDATAETTTEPQSTDGGVKINIRCSNGSKFSVQISLDSTVVSFKDVIAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANTTGGANTTGANTTTTNARAAGANEGGGLGGPGLGASLFPGLGGINGMGGGGGLNSLFGAGPPDLEQLQQPFMSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNDSSRILGTQGGQTRNPSTNPSTTNAEATSPVPNTNPLPNPWSSAPTGGAQTNVRRSTPTAADARQQTPTGLGGLGMPDLEGMLGGMPDAGSLTQLMQNPAISQMMQSIMSNPQTMNQILGMNTDQRGMPDMNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGTGPVNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPETLYATQLTQLQEMGFFDTQENLRALIATSGNVHAAVERLLGNSGQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0963 542 SUPERFAMILY Ubiquitin-like 11 103 IPR029071 -
Mtr5g0963 542 Pfam UBA/TS-N domain 500 536 IPR015940 -
Mtr5g0963 542 Gene3D - 7 103 - -
Mtr5g0963 542 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g0963 542 MobiDBLite consensus disorder prediction 278 312 - -
Mtr5g0963 542 MobiDBLite consensus disorder prediction 447 466 - -
Mtr5g0963 542 MobiDBLite consensus disorder prediction 278 353 - -
Mtr5g0963 542 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Mtr5g0963 542 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 542 - -
Mtr5g0963 542 MobiDBLite consensus disorder prediction 95 116 - -
Mtr5g0963 542 Gene3D - 482 542 - -
Mtr5g0963 542 SUPERFAMILY UBA-like 496 538 IPR009060 GO:0005515
Mtr5g0963 542 MobiDBLite consensus disorder prediction 447 465 - -
Mtr5g0963 542 SMART uba_6 500 538 IPR015940 -
Mtr5g0963 542 SMART ubq_7 20 91 IPR000626 GO:0005515
Mtr5g0963 542 CDD UBA_PLICs 500 538 - -
Mtr5g0963 542 CDD Ubl_Dsk2p_like 20 92 - -
Mtr5g0963 542 Gene3D - 196 253 - -
Mtr5g0963 542 PANTHER UBIQUILIN 3 542 - -
Mtr5g0963 542 MobiDBLite consensus disorder prediction 95 119 - -
Mtr5g0963 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 539 IPR015940 -
Mtr5g0963 542 MobiDBLite consensus disorder prediction 320 346 - -
Mtr5g0963 542 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Mtr5g0963 542 SMART CBM 401 436 IPR006636 -
Mtr5g0963 542 SMART CBM 146 187 IPR006636 -
Mtr5g0963 542 SMART CBM 200 239 IPR006636 -
Mtr5g0963 542 SMART CBM 356 398 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0963 Mtr-Chr5 9509055 9515466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0963 20 89 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 31.429 1.08e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0963 K04523 - gmx:100797539 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0963 5 9509055 9515466 Mtr8g2323 8 33708020 33713128 PCT