Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0961 ATGAAGTTTTCTGTGGAGAAGAATGTTTCTAACAACCCCACAAATTTTGAAGGAGGGTTAGATTCTAGAAAGGTTGGGCAAAACAGAAGAGCATTGGGTGTGATTAATCAGAATTTGGTTGTGGAAGGACGTCCTTATCCTTGTGTTGTTAACAAGAGGGCATTGTCAGAGAGAAATAATGTTTGTGAGAAGAAACAAGCGGATCCGGTTCATCGACCCATCACTAGGAGGTTTGCTGCAAAGATTGCTAGCACAAAAACATCTAATGCTGAGGGAACTACCAAAAAGTCAAACTTGGCGAATTCAAGTTCAAATGGATTTGGAGATTTCATATTTGTTGATGATGAACACAAGCCAGTGGAGGATCAGCCAGTGCCAATGGCTTTAGAGCAAACAGAACCAATGCATAGCGAATCCGATCGGATGGAGGAAGTTGAGATGGAGGATATCATGGAAGAGCCTGTTATGGACATTGACACCCCTGATGCAAATGACCCTCTTGCAGTTGCTGAATATATTGAAGATCTTTATTCTTACTACAGAAAAGTTGAGAGTACTGGCTGTGTTTCACCAAACTATATGGCACAGCAATTTGACATTAATGAAAGGATGAGGGCTATACTGGTTGACTGGCTTATTGAGGTGCATGACAAATTCGACCTCATGCATGAGACATTGTTTCTCACTGTCAATCTTATAGACAGATTTTTGGAAAAGCAGTCTGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTCTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCAGTGCCTGTGGTTGGAGATCTGATTCTTATATCAGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGAGAAGGTGATGGTCAATGCATTGAAGTTTAACATATCTGTGCCAACAGCCTATGTTTTCATGAGAAGGTTCTTAAAGGCGGCTCAAGCAGACAGAAAACTTGAGTTGCTAGCTTTCTTCTTGATTGAGCTATCTCTTGTAGAATATGCAATGTTGAAGTTCCCTCCTTCTCAACTAGCTGCCGCTGCTGTCTATACAGCTCAATGCACTATGTATGGTGTCAAACAATGGAGTAAGACATGTGAATGGCACACCAACTACTCTGAAGATCAACTCTTAGAGTGCTCTAGTTTAATGGTTGACTTTCACAAGAAGGCTGGGACAGGGAAACTTACAGGGGCACATAGGAAGTATGGCACATCAAAATTTAGCTATACTGCGAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACGAGTCGTAG 1287 0.4172 MKFSVEKNVSNNPTNFEGGLDSRKVGQNRRALGVINQNLVVEGRPYPCVVNKRALSERNNVCEKKQADPVHRPITRRFAAKIASTKTSNAEGTTKKSNLANSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMHSESDRMEEVEMEDIMEEPVMDIDTPDANDPLAVAEYIEDLYSYYRKVESTGCVSPNYMAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNALKFNISVPTAYVFMRRFLKAAQADRKLELLAFFLIELSLVEYAMLKFPPSQLAAAAVYTAQCTMYGVKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYGTSKFSYTAKCEPASFLLENES* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0961 428 PANTHER CYCLIN-B2-1 19 423 - -
Mtr5g0961 428 Gene3D - 189 301 - -
Mtr5g0961 428 CDD CYCLIN 301 388 IPR013763 -
Mtr5g0961 428 Gene3D - 175 415 - -
Mtr5g0961 428 ProSitePatterns Cyclins signature. 205 236 IPR006671 -
Mtr5g0961 428 CDD CYCLIN 204 293 IPR013763 -
Mtr5g0961 428 Pfam Cyclin, C-terminal domain 303 418 IPR004367 -
Mtr5g0961 428 MobiDBLite consensus disorder prediction 1 18 - -
Mtr5g0961 428 SUPERFAMILY Cyclin-like 164 300 IPR036915 -
Mtr5g0961 428 SMART Cyclin_C_2 303 420 IPR004367 -
Mtr5g0961 428 SMART cyclin_7 307 389 IPR013763 -
Mtr5g0961 428 SMART cyclin_7 210 294 IPR013763 -
Mtr5g0961 428 SUPERFAMILY Cyclin-like 302 420 IPR036915 -
Mtr5g0961 428 PANTHER CYCLINS 19 423 IPR039361 -
Mtr5g0961 428 PIRSF Cyclin_A_B_D_E 5 428 IPR039361 -
Mtr5g0961 428 MobiDBLite consensus disorder prediction 1 22 - -
Mtr5g0961 428 Pfam Cyclin, N-terminal domain 175 301 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0961 Mtr-Chr5 9488425 9492339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0961 26 424 Core Cell Cycle Gene Families AT1G20610 59.453 9.95e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0961 K21777 - gmx:100798068 684.871