LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g0955	ATGGAAGACGAAGCCACATCTGCTACACGCGCTGGCTCGCGGTCAAACGATGACGAAGTTGATCCAACCCAGGGATTGGAAGATAAGTCATTAGATGATGAGTATGGTACTGACTTAAACGAGGAACATCTTGCCAATTCTGGATTTGATCGATGTAATTTTGATGACGATACTGCAGTTAACGGGCTTCAAGATATATGGAAAGTTGAAGTAAATGAGGCACCTGCTGAGTACATTATGAAATTTCATTTTCCAAATAATGAGGTTGCTTTTGTGTTTTACAATTGGTACGCTAATGTGAATGGTTTTGCTGCCCGGAAAAGCAAGTTTATGAGGAACATCAAGGGTGAGATAACGCAACAGACTTTCCTTTGCTATAGAGAAGGTACTAGACAAGTAAAAGTTGATGCAGGGGTGATTAGGAAGCGACGTTCAAAACTACGAACCAGATGTGGTTGCTTGGCAAAATGTCGTGTTCATATTGAAGCTACCAATGGGAGATGGTACATCAAATATTTGAATGACGAACACAATCACCCCTTATTGGATGACAAATTTATGGGCATGTTACCTGCACATAGGAAGATGACGGAGTATGATATATTGCAAATGAACAACATGAGAAAGGTTGGGATTAGGACCCCTCACATATACGGTTTGTTTGCCAATCAGGCTGGTGGGTATCAAAAGGTTGGATTCAGAAAAAGAGATATGTATAATCAGTTAGAGAGGCAAAGACGATCTAACATTTCAGATGCAAGTGATGCCCTTGGATTTCTCGAATCAATGGGATCTACTGATGATAAGATTTTCTGGAAGCATACTGTAGATGAAGATGGAAGATTGGAAAAGTTGATATGGTTTGACGGTGTAGGACAAATGGACTATTCTGTGTTTGGTGATGTTTTGGCATTTGACGCTACATATCAAAAGAACAAGTACTTGTGTCCGTTGGTTGTTTTCTCCGGTGTCAATCATCACAATCAGAGTATTGTGTTTGGGTCTGCCATTGTTCGTAATGAGACAGAGCAAACATATGTGTGGTTGTTGGAGCAATTTTTGACAGCAATGGGAGGTAAGAGTCCTACATCAGTCATAACAGATGGAGATTTGTCTATGCGAAATGCAATCAAAAGAGTCTTTCCTGATGCTCACCATAGACTTTGTGCTTGGCACCTTCTCCGCAATGCAACAAGCAACGTAGGAAATGTCCAATTTGTATCTAGATTAAGACAATGTATGTTGGGTGATTATGATATTGCTGAATTCAAGCGTAAATGGGAATCAATGGTAGTTGAATTTTGTGTTGAGGAAAACAAATGGGTAAATGAACTGTATGAGAAGAGGAATATGTGGGCCACTGCTCATATTCGTGGTAATTTCTTTGCTGGTTTTAGGACGACTTCTCGTTGTGAGGCTTTGCATTCTCAACTGGGTAAGTATGTTAATTTTCAAAACAATCTTTTGGAGTTTTTACACCATTACTTTCGTTGTCTGAGTTTTATGAGGTACAAAGAAGTCGAAGCAGATTTTTCTTCGGTCCATGGGGAGATTTTAATGCAGACTGAATTTCATTCTCTTGAGAGGTCAGCGGCTAATGTTTATACAAGAGAGATATTTTTGCTATTTCTTCCCGTACTAAAGAAAGCATGCAGATTAAAGGTGTTGGGTGTTAGACAAACCACAAGTAGTTATATATACACAGTGTCAAAGTATTGTAGAGAAGGGTCAGAATGGCAGGTGTCATATTACCCAGCTAGTCTCGAATTTAAGTGCTCTTGTTTGAGGTTGGAATCATTGGGTATTCCATGCGAACACTTAATTTATGTAATCACATATTTGGACATTGTAAAACTCCCTGATTGTTTAGTTTTGAAGAGATGGAGAAAGGACGTGAAGGACTCATTGCCAATTTCAAATGATTGTCTGTCTTCTGCCTGGGACCCATCAATTGTAAGTCAATATGTTGGTATTGTCGAGCATTGCAAGAGGATGGCATGTGCTGCTGTAAAATGTCGAAATGCAGAGTACGTTCGAAGCACTATAGAGTGGATAAGTACACGTACAGAGACATTGGAGTCAATTGCTGCAGAGGATATTCCGACTCATTCTGACTTAAACGGTGCTTTCGCAGAAAACTTGATGAACCCATCCCGTGCTAGAACTAAAGGTTGTCGTAGTGCTGTGCCGTCTGCTAGTAATCGATTAAAGCGACCATCACGTAAAGCACCAGCATGCGGCGTATGTCGTGAAGAAGGTCATAACCGAAAGTGTTGTCCGGTTCAAAGACGGACCGATGCCATGTCCCAAAATCAAGTTGGCTCAAATGTAATGTATTATGAAGATGAAGAGTGGCAGTAG	2361	0.4036	MEDEATSATRAGSRSNDDEVDPTQGLEDKSLDDEYGTDLNEEHLANSGFDRCNFDDDTAVNGLQDIWKVEVNEAPAEYIMKFHFPNNEVAFVFYNWYANVNGFAARKSKFMRNIKGEITQQTFLCYREGTRQVKVDAGVIRKRRSKLRTRCGCLAKCRVHIEATNGRWYIKYLNDEHNHPLLDDKFMGMLPAHRKMTEYDILQMNNMRKVGIRTPHIYGLFANQAGGYQKVGFRKRDMYNQLERQRRSNISDASDALGFLESMGSTDDKIFWKHTVDEDGRLEKLIWFDGVGQMDYSVFGDVLAFDATYQKNKYLCPLVVFSGVNHHNQSIVFGSAIVRNETEQTYVWLLEQFLTAMGGKSPTSVITDGDLSMRNAIKRVFPDAHHRLCAWHLLRNATSNVGNVQFVSRLRQCMLGDYDIAEFKRKWESMVVEFCVEENKWVNELYEKRNMWATAHIRGNFFAGFRTTSRCEALHSQLGKYVNFQNNLLEFLHHYFRCLSFMRYKEVEADFSSVHGEILMQTEFHSLERSAANVYTREIFLLFLPVLKKACRLKVLGVRQTTSSYIYTVSKYCREGSEWQVSYYPASLEFKCSCLRLESLGIPCEHLIYVITYLDIVKLPDCLVLKRWRKDVKDSLPISNDCLSSAWDPSIVSQYVGIVEHCKRMACAAVKCRNAEYVRSTIEWISTRTETLESIAAEDIPTHSDLNGAFAENLMNPSRARTKGCRSAVPSASNRLKRPSRKAPACGVCREEGHNRKCCPVQRRTDAMSQNQVGSNVMYYEDEEWQ*	787

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g0955	786	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	78	667	IPR031052	GO:0006355
	Mtr5g0955	786	ProSiteProfiles	Zinc finger SWIM-type profile.	584	615	IPR007527	GO:0008270
	Mtr5g0955	786	PANTHER	OS02G0262500 PROTEIN	78	667	-	-
	Mtr5g0955	786	Pfam	MULE transposase domain	302	396	IPR018289	-
	Mtr5g0955	786	Pfam	FAR1 DNA-binding domain	93	182	IPR004330	-
	Mtr5g0955	786	SMART	26again6	590	617	IPR006564	GO:0008270
	Mtr5g0955	786	MobiDBLite	consensus disorder prediction	1	34	-	-
	Mtr5g0955	786	MobiDBLite	consensus disorder prediction	14	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g0955	Mtr-Chr5	9431942	9434682	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Mtr5g0955		MULE	3.1e-29	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g0955	-		-	ccaj:109791994	672.159