Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0930 ATGTTCAATTTTTCCACCCTTGTTCATAATCCTCAACCCCAAACACTCATCTTCTCTCCATTCCCTTCTTCCACACCTCGCAAGTTTCAATCTTTTCAACCTCTCAAATCCCCCACAAACCGCAACCTCTACAAAATTCTCTCTTCATCATACCAAAATGACAACAACGACAACGACGAAGAACACATCATCGGAGATTGTCTGGTTTTCGAAGAAGGCATTTTCGAAGACCCCATTTTCCCAACATCCGACAACAACCTCGTAAACAACAAAAAACCGAAACCAATTTCAAAGAAGAAAAAACAGACAGTGATAAAGTCCGAGAATCTTGTTCCTGGTAAATGGAAAGAAGTTCAAGCAGGGATAAACATAACGAAGAAAGAACAGCCTAAGATAGCTCAAGAGATTGAGTTTAATAGTAAAGAAGAACGGCGTAAGATAGCTCAAGAGTTTGAGTTTAATAGTAAAGAAGAACGGCGTAAGATAGCTCAAGAGTTTGAGTTTAATAGTAATTTTATGAAGAAGAAAAGTGGGTTGGTTCATTTGAGGGATATTGATTCGAACGAGTATAAAGCTTATAAAGAAGCTAAATTGGCTCAGTTGACGCCTTTGGTTCTTGATAAGGTTCCGAGTTTTTGTTTTGCTGAGAAAAAGAAGGAAAGAGAATTAGATGAATTGAGTGATGAGAGGGTAGAGGCTAGGAATCCTAGGTGGGCTGTTTATGGGAAAGGGTTGGAGGATGTTAAGGAGTTTTTGAACAGTGAGAGTTATGATCCTGCTGCTAAGAAAATTGGAGGTCTTCCTTTTTTGTTTACCTGGGAGGAGAGGGATTCGTTGAAAAAGAAAACGCCAGACTTGTCAGTTGCTACTTCAGATAAATGGATTCCTTTGCACACTTTTGCTGCGAGCGGAGAATCTTTCCTTTTAGATACTTTGTTGCAGCATGATGTTGATATTAATGCTATGGATAAGGATGGTTTGAGCGCTCTTTACAAAGCGATAATTGGAAGAAAGCTTGCCATAACCCATCTTCTCGTGAGAAACTTGGCGAATCCGTTTGTGCAAGATAATGATGGGGCCACCTTGATGCACTATGCTGTACAAACAGCGTCTGCCCGAGCAATTAAAACACTCTTGTTTTACAATGTGGATATAAATCTTCGGGACAACGATGGCTGGACACCATTACATCTTGCTGTTCAGACTCAGAGACCTGATATAGTGGAGCTTCTGCTGATTAAAGGCGCTGATCGGACATTAAAAAACAAGGATGGTTTAACTCCACTCGACCTTTGCCTTTACTCTGGTCAAAATGTCAGTACATATGAGTTAATCAAGTTGTTGAAACAGCTGCCTTATATAGACACGCCTGAGAGACGAGTTAATCAAGTTGTTAAAACAGCCTTAAATAGACACGCCCGACGGAAGTGGATAAGAAAATAA 1443 0.4012 MFNFSTLVHNPQPQTLIFSPFPSSTPRKFQSFQPLKSPTNRNLYKILSSSYQNDNNDNDEEHIIGDCLVFEEGIFEDPIFPTSDNNLVNNKKPKPISKKKKQTVIKSENLVPGKWKEVQAGINITKKEQPKIAQEIEFNSKEERRKIAQEFEFNSKEERRKIAQEFEFNSNFMKKKSGLVHLRDIDSNEYKAYKEAKLAQLTPLVLDKVPSFCFAEKKKERELDELSDERVEARNPRWAVYGKGLEDVKEFLNSESYDPAAKKIGGLPFLFTWEERDSLKKKTPDLSVATSDKWIPLHTFAASGESFLLDTLLQHDVDINAMDKDGLSALYKAIIGRKLAITHLLVRNLANPFVQDNDGATLMHYAVQTASARAIKTLLFYNVDINLRDNDGWTPLHLAVQTQRPDIVELLLIKGADRTLKNKDGLTPLDLCLYSGQNVSTYELIKLLKQLPYIDTPERRVNQVVKTALNRHARRKWIRK* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0930 480 Gene3D - 238 474 IPR036770 -
Mtr5g0930 480 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN, CHLOROPLASTIC 16 455 - -
Mtr5g0930 480 ProSiteProfiles Ankyrin repeat profile. 292 324 IPR002110 GO:0005515
Mtr5g0930 480 ProSiteProfiles Ankyrin repeat profile. 358 390 IPR002110 GO:0005515
Mtr5g0930 480 ProSiteProfiles Ankyrin repeat region circular profile. 358 390 - -
Mtr5g0930 480 Pfam Ankyrin repeats (3 copies) 343 421 IPR002110 GO:0005515
Mtr5g0930 480 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Mtr5g0930 480 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Mtr5g0930 480 SUPERFAMILY Ankyrin repeat 278 437 IPR036770 -
Mtr5g0930 480 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 16 455 - -
Mtr5g0930 480 SMART ANK_2a 358 387 IPR002110 GO:0005515
Mtr5g0930 480 SMART ANK_2a 325 354 IPR002110 GO:0005515
Mtr5g0930 480 SMART ANK_2a 292 321 IPR002110 GO:0005515
Mtr5g0930 480 SMART ANK_2a 424 453 IPR002110 GO:0005515
Mtr5g0930 480 SMART ANK_2a 391 420 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0930 Mtr-Chr5 9192137 9196706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0930 327 442 Ion Channels AT2G25600 30.252 1.97e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0930 - - mtr:MTR_5g023090 932.554