Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0929 ATGGATGATTCTCCAGTAAGAAGGCTTTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCCAGGTCTCGGTCCAGGTCTCAGTCAGGATCCCTTGACAGGCACAGGCCCAGGTCTCTGTCAAGGTCGCCTGAAATGCAAAGGCCTAGGTCGAGGTCGAGGTCTCCTGAAATGCAAAGGCCTAGGTCTCTGTCAAGGTCTCCTGAAATGCAAAGGCCTAGGTCACGGTCAAGATCCCTTGAAAAGCAAAGGCCTCCGTCTCAGTCAATGTCTCGTGAAATGCAAAGGCCTAGGTCTCGGTCCAGATCTCTTGAGAGGCAAAGGCCTAGATCCCCCTCGAGAAATCGTGGCAGATCAAGATCAAGAAGTCCTGATAGGAATGGTGGGGACACTCTTTATGTGACTGGTCTCTCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGGAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATATCTCGAGGTTTTGCTTTTGTCACTATGGATACTGCTGAGGATGCAAACCGCTGTATCAAGTACCTCAATCAATCCATTTTAGAGGGCCGCTATATCACTGTTGAGCGGTCAAAGAGAAAGCGGCCAAGAACTCCCACACCTGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGACCTCGTGGTGGTGACCGTGGAAGGCATCAGGGTGGATTTGGTCGTGATGATTATCCATATCATAGGTCTCCAAGGCGTTCTCCGTATCGTGGTAGCAGGGATTATTCCCCAAGACACTCTCCTTATGGTGGAAGTGGAAGGTATAGGAGGGATAGGTCTAGGTCACCTCCTTATGCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGGCCTAGGTGA 912 0.5077 MDDSPVRRLSRSPSPWRAQSRSRSRSRSQSGSLDRHRPRSLSRSPEMQRPRSRSRSPEMQRPRSLSRSPEMQRPRSRSRSLEKQRPPSQSMSREMQRPRSRSRSLERQRPRSPSRNRGRSRSRSPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYLNQSILEGRYITVERSKRKRPRTPTPGHYLGLKNTRDYGPRGGDRGRHQGGFGRDDYPYHRSPRRSPYRGSRDYSPRHSPYGGSGRYRRDRSRSPPYAPYGSPDRRYARGPR* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0929 303 CDD RRM_RBMX_like 130 209 - -
Mtr5g0929 303 MobiDBLite consensus disorder prediction 13 27 - -
Mtr5g0929 303 MobiDBLite consensus disorder prediction 1 138 - -
Mtr5g0929 303 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 75 299 - -
Mtr5g0929 303 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 3 58 - -
Mtr5g0929 303 PANTHER RNA RECOGNITION MOTIF 75 299 - -
Mtr5g0929 303 PANTHER RNA RECOGNITION MOTIF 3 58 - -
Mtr5g0929 303 MobiDBLite consensus disorder prediction 68 82 - -
Mtr5g0929 303 MobiDBLite consensus disorder prediction 206 303 - -
Mtr5g0929 303 MobiDBLite consensus disorder prediction 28 60 - -
Mtr5g0929 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Mtr5g0929 303 Gene3D - 65 216 IPR012677 -
Mtr5g0929 303 SUPERFAMILY RNA-binding domain, RBD 127 240 IPR035979 GO:0003676
Mtr5g0929 303 MobiDBLite consensus disorder prediction 96 126 - -
Mtr5g0929 303 SMART rrm1_1 132 205 IPR000504 GO:0003723
Mtr5g0929 303 MobiDBLite consensus disorder prediction 229 263 - -
Mtr5g0929 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 202 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0929 Mtr-Chr5 9184855 9187822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0929 127 216 Eukaryotic Initiation Factors Gene Family AT1G49760 30.000 5.40e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0929 K12897 - gmx:100527350 291.582