Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0919 ATGGATTTTGTACCAAATCCATGTCCTTCTCGTTCTTCTTTGTTCGGTTCTTTTGGGAATTTCGTTGACAAAGTTAAACAATTTGGTACCCTCGCAATTTCTGTTATCATTGGAAACATTTTCTCTGCGATCTTGACCTTCTGTTTTGCATTAGTTGGAACATTATTGGGTGCTTTGACAGGAGCTTTGATAGGTCAAGAGACCGAAAGCGGTTTCATTCGAGGTGCCGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCTATTGAAGTTTTTGAATCATCTCTTGTTCTTTGGCATTCTGATGAATCTGGAATTGGTTGTCTTTTATACTTGATTGATGTTATTGTTAGCTTGTTGAGTGGAAGACTTGTGCGTGAGAGGATAGGTCCTGCAATGCTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGTGGTTCCAAAGGGTTATCCGTAGATTCGGTTTCGAAGATCCCAAAAATCAAAATCACTGCTGACAATATTGAGGCATCAGGGGAGAAAGTTTCTTGTTCAGTTTGTCTCCAGGACTTTCAACTTGGAGAGACAGTTAGAAGTTTACCTCATTGTCATCACATGTTTCATCTACCTTGCATAGATATGTGGCTTTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 705 0.4014 MDFVPNPCPSRSSLFGSFGNFVDKVKQFGTLAISVIIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSVDSVSKIPKIKITADNIEASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0919 234 SMART ring_2 189 230 IPR001841 -
Mtr5g0919 234 Pfam Ring finger domain 188 231 IPR001841 -
Mtr5g0919 234 Pfam YMGG-like Gly-zipper 49 84 IPR027367 -
Mtr5g0919 234 CDD RING-H2_PA-TM-RING 189 231 - -
Mtr5g0919 234 SUPERFAMILY RING/U-box 183 234 - -
Mtr5g0919 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Mtr5g0919 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 234 IPR013083 -
Mtr5g0919 234 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 10 234 - -
Mtr5g0919 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 234 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0919 Mtr-Chr5 9103696 9105779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0919 22 234 C3H Transcription Factor Family AT5G66070 76.056 7.11e-115 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0919 - - lja:Lj2g3v1670720.1 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0919 5 9103696 9105779 Mtr8g2369 8 34129312 34131448 PCT