Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0879 ATGCTTTCCTCCATATCTCTTCCTTCTTCTCTCTACGCCGCCGGTAACTTCTCCGGCGCCACCGTAACACCACCACCGTGCCGCGTCAGATCGAAGCCAATACTCATCACCGCAAGCGCTACAGCAACTGCGGAAGCTCGCTCTACATGGACAGAGCAACAAAGACCTTCGTATTTAAACATGAACTCTTTTTCTTACTCTTCTCCTGGATCACACTATGAGATCCTCGGTATATCAGCAGGTGCTTCGAATCAAGAAATCAAGGCGGCCTACCGGCGACTTGCAAGAGTCTGCCACCCTGATGTGGCGGCGATTGATCGGAAAAACTCATCGGCGGATGATTTCATGAAGATTCACTCTGCATATTCGACGCTTTCGGATCCAGATAAACGTGCTAATTATGATCGGAGTCTTTTCCGGCAACAACGACGGCCGTTGTCGACGATGGTGTCTTCCGGCTACTCAAGTCGCAAATGGGAGACCGATCAGTGTTGGTAG 498 0.506 MLSSISLPSSLYAAGNFSGATVTPPPCRVRSKPILITASATATAEARSTWTEQQRPSYLNMNSFSYSSPGSHYEILGISAGASNQEIKAAYRRLARVCHPDVAAIDRKNSSADDFMKIHSAYSTLSDPDKRANYDRSLFRQQRRPLSTMVSSGYSSRKWETDQCW* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0879 165 ProSiteProfiles dnaJ domain profile. 71 138 IPR001623 -
Mtr5g0879 165 SMART dnaj_3 70 130 IPR001623 -
Mtr5g0879 165 ProSitePatterns Nt-dnaJ domain signature. 115 134 IPR018253 -
Mtr5g0879 165 Pfam DnaJ domain 72 135 IPR001623 -
Mtr5g0879 165 CDD DnaJ 72 127 IPR001623 -
Mtr5g0879 165 PANTHER - 1 165 - -
Mtr5g0879 165 SUPERFAMILY Chaperone J-domain 70 140 IPR036869 -
Mtr5g0879 165 PRINTS DnaJ domain signature 73 91 IPR001623 -
Mtr5g0879 165 PRINTS DnaJ domain signature 91 106 IPR001623 -
Mtr5g0879 165 PRINTS DnaJ domain signature 110 130 IPR001623 -
Mtr5g0879 165 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 165 - -
Mtr5g0879 165 Gene3D DnaJ domain 58 158 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0879 Mtr-Chr5 8727286 8728052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0879 61 135 C2H2 Transcription Factor Family AT1G74250 44.304 1.87e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0879 - - gmx:100800959 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0879 5 8727286 8728052 Mtr5g0879 5 8727286 8728052 ECH
Mtr5g0879 5 8727286 8728052 Mtr8g2408 8 34507657 34508544 ECH