Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0874 ATGGGTTTATGTTTTTCTTCTACAAAGGTTGTTAGTGGTTCTAACAGCAACACCACAAACAATGATAACCGTAAACGGAATCAGTCAACAACCACGGATACCACCGTCACGGTAACAACAGCAACAACGGCGGCGCAGAAACAAACGGCACAGAGACGTAAAGGAGGGTCAAATGAAACAGCCCAGAAGAAGAATCATCATCAACATCATAGGTTAAAAGAGAAAACAGGTTCTAAACATGTTCCTTGTGGAAAAAGAACGGATTTTGGGTATGAGAAAGATTTTGATAAAAGATTTTCTCTTGGGAAATTGTTGGGTCATGGACAATTTGGTTATACTTATGTTGGTGTTGATAAATCCAATGGAGATCGTGTCGCCGTTAAGCGACTCGAGAAAGCTAAGATGGTTCTCCCTATAGCAGTTGAGGATGTAAAAAGAGAGGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTTTATAATGCTTTTGACGATGATTCATATGTGTACATAGTTATGGAGTTATGCGAAGGTGGAGAACTACTAGACCGGATACTAAACAAAAAGGACAGCCGTTATACTGAAAAAGATGCCGCCGTTGTTGTAAGGCAGATGCTGAAGGTTGCAGCTCAGTGTCATTTACATGGTTTGGTACATCGCGACATGAAGCCAGAGAATTTTCTTTTCAAATCAAACAAAGAAGATTCAGCTTTGAAGGCCACTGATTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGAAGTGCTTACTATGTCGCACCAGAAGTGTTGAAACGGAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGTCCATTTTGGGACAAGACTGAAGATGGTATCTTCAAGGAGGTCTTACGAAACAAGCCTGATTTCCGGCGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTCGGGCAAGATTAACGGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATCCGAGATTCCAATTGATATATCTGTCCTAAACAACATGCGGCAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCATTGAGGGCATTGGCTAGCACACTTAACGAAGGTGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTGCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCGTGGAAGTTGAAAGAATCCCGTGTATTGGAGATATTGCAAGCGATTGACAGCAACACGGATGGATTAGTAGATTTCACCGAGTTTGTTGCAGCTACTTTACATGTGCATCAATTGGAGGAACATGACTCCGACAAGTGGCAGCAACGGTCACAGGCTGCTTTTGAGAAATTTGACATAGACAAGGATGGCTATATTACTCCAGAGGAACTCAGAATGCACACTGGTATGAGAGGTTCCATCGATCCTCTGCTCGAGGAAGCCGATATTGACAAAGATGGAAAGATCAGCTTACCAGAATTCAGGAGACTTTTAAGAACTGCAAGCATTGGTTCTCGAAACGTAACAAGCCCAACTCTACGTCATCGAAGGATCTAG 1683 0.4171 MGLCFSSTKVVSGSNSNTTNNDNRKRNQSTTTDTTVTVTTATTAAQKQTAQRRKGGSNETAQKKNHHQHHRLKEKTGSKHVPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGVDKSNGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFDDDSYVYIVMELCEGGELLDRILNKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPENFLFKSNKEDSALKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEGELSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQQRSQAAFEKFDIDKDGYITPEELRMHTGMRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNVTSPTLRHRRI* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0874 560 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Mtr5g0874 560 ProSiteProfiles EF-hand calcium-binding domain profile. 481 516 IPR002048 GO:0005509
Mtr5g0874 560 ProSiteProfiles Protein kinase domain profile. 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0874 560 SUPERFAMILY EF-hand 391 542 IPR011992 -
Mtr5g0874 560 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Mtr5g0874 560 Gene3D - 376 539 - -
Mtr5g0874 560 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Mtr5g0874 560 Pfam Protein kinase domain 101 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0874 560 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Mtr5g0874 560 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 13 550 - -
Mtr5g0874 560 MobiDBLite consensus disorder prediction 1 83 - -
Mtr5g0874 560 SUPERFAMILY Protein kinase-like (PK-like) 96 370 IPR011009 -
Mtr5g0874 560 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Mtr5g0874 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 550 - -
Mtr5g0874 560 Pfam EF-hand domain pair 405 468 IPR002048 GO:0005509
Mtr5g0874 560 Pfam EF-hand domain pair 487 540 IPR002048 GO:0005509
Mtr5g0874 560 MobiDBLite consensus disorder prediction 1 56 - -
Mtr5g0874 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Mtr5g0874 560 ProSiteProfiles EF-hand calcium-binding domain profile. 519 546 IPR002048 GO:0005509
Mtr5g0874 560 SMART efh_1 485 513 IPR002048 GO:0005509
Mtr5g0874 560 SMART efh_1 443 471 IPR002048 GO:0005509
Mtr5g0874 560 SMART efh_1 406 434 IPR002048 GO:0005509
Mtr5g0874 560 SMART efh_1 515 543 IPR002048 GO:0005509
Mtr5g0874 560 CDD STKc_CAMK 98 358 - -
Mtr5g0874 560 Gene3D Transferase(Phosphotransferase) domain 1 185 366 - -
Mtr5g0874 560 SMART serkin_6 99 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0874 560 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Mtr5g0874 560 ProSitePatterns EF-hand calcium-binding domain. 494 506 IPR018247 -
Mtr5g0874 560 Gene3D - 400 469 - -
Mtr5g0874 560 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0874 Mtr-Chr5 8649014 8654970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0874 1 553 EF-hand Containing Proteins AT2G17890 76.021 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr5g0874 Pkinase 4.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0874 K13412 - gmx:100817249 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0874 5 8649014 8654970 Mtr5g0874 5 8649014 8654970 ECH