Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0859 ATGTCTGCTTCCGGAGAAGTTGATGATGTTGAAATGCCGGTGGAGCCTAAACCTGTGAAGGAAATGAAACCAAAAGCTTCCAAACAAACCAAAACAGCTTCTCATCCTCCATATTTTGAGATGGTTAAGGAGGCTTTACTGGCTCTAAAGGAGAGGAATGGCTCAAGCCCTTACGCTATAGCGAAATACATGGACGAGAAGTTCAAGCCGGTGCTCCCAGCAAATTTCAAGAAGATACTAAGCTTGCAGCTTAAGAATCAAACCAAGAGAGGGAAGCTGGTGAAGATCAAAGCTTCGTATAAACTATCTGATGCCGAGAAGCCGAAGAAGGAGAAAAAAGACTCTGTTGCGGAGAAGAAGCAACAAAACCAGAAGAGGAAGACAAATGCAACGGTTGGTGGTAAGAAGAAGGTTGTGAATAAGAAGAGCAAGTCCATTAAGTCTACTACTAATAAGAGGGGTAGAAAAGCTAATGCTGCAACTGAAACTATGTAA 495 0.4263 MSASGEVDDVEMPVEPKPVKEMKPKASKQTKTASHPPYFEMVKEALLALKERNGSSPYAIAKYMDEKFKPVLPANFKKILSLQLKNQTKRGKLVKIKASYKLSDAEKPKKEKKDSVAEKKQQNQKRKTNATVGGKKKVVNKKSKSIKSTTNKRGRKANAATETM* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0859 164 SUPERFAMILY "Winged helix" DNA-binding domain 31 113 IPR036390 -
Mtr5g0859 164 MobiDBLite consensus disorder prediction 104 164 - -
Mtr5g0859 164 MobiDBLite consensus disorder prediction 137 151 - -
Mtr5g0859 164 PANTHER HISTONE H1 16 159 - -
Mtr5g0859 164 MobiDBLite consensus disorder prediction 104 125 - -
Mtr5g0859 164 Pfam linker histone H1 and H5 family 35 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g0859 164 CDD H15 32 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g0859 164 MobiDBLite consensus disorder prediction 10 28 - -
Mtr5g0859 164 PANTHER HISTONE H1 16 159 - -
Mtr5g0859 164 MobiDBLite consensus disorder prediction 1 36 - -
Mtr5g0859 164 Gene3D - 28 117 IPR036388 -
Mtr5g0859 164 SMART h15plus2 32 99 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr5g0859 164 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 34 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0859 Mtr-Chr5 8487353 8488433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0859 26 105 Single Myb Histone (SMH) Gene Family AT1G49950 31.034 1.40e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0859 K11275 - gmx:100500169 139.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0859 5 8487353 8488433 Mtr5g0859 5 8487353 8488433 ECH