Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0858 ATGGATTCTATGGAGTCATGTGTCCCACCAGGGTTTCGTTTCCACCCAACTGATGAAGAACTTGTTGGTTATTATCTCAGAAAGAAAATTGCTTCTCAGAAAATTGACCTTGATGTTATCAGAGAGATCGATCTTTATCGTATTGAACCATGGGATCTTCAAGAGAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCATAAAGATAAAAAGTATCCAACAGGGACAAGAACCAACAGAGCTACCATGGCTGGGTTTTGGAAAGCTACAGGAAGAGATAAAGCAGTTTATGATAAGATGAAACTAATTGGGATGAGGAAGACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAATCTGATTGGATCATGCATGAATATAGGCTTGAATCTGATGAAAATGGACCTCCACAGGAGGAAGGATGGGTAGTGTGTAGAGCATTTAAGAAAAGAACAACAAATAGCCAAAGTACAAAAAGTACTATTGAAGGATGGGACACAAGCTACTTCTATGAAGAAGCTGCAAGTAGGGTCAACAATTCCATGGTGGATCCAATTGATCAGATAATTTCAAGGCAACCTCAAAGCTATTTATCCCAAAGTTATAACATGTGTAAGCTAGAGATAGAAGCATGCATGCATGCAGAACAATTTTTGCAGCTTCCTCAGCTTGAAAGTCCTTCATTGCCATTAGTAAAGAGGCCAAGCACAATGTCTCTAGTATCTGACAATAATAACGATGACATTAACGACCAAAACAGGTTGCTATTATTATCGAACAACAACGATAATGTTACTACAAATACAGTTACTGATTGGAGAGCTCTTGATAAGTTTGTGGCTTCTCAACTGAGTCACGAAGTTGAAACTGATCAAGGAGTGTTGTTGTCAAGTTTTGGAACAAATAATAATCCTAGCTCGGACATGGCATTGATGTTACTGCAGCAGGGTAATAGAGATGAAGAGAACAAGTTAAGTCCATTTTTGAATGCAAGTTCAGATTGCAGTGATATTGGGATATGCGTATTTGAAAAATGA 1059 0.3872 MDSMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKRTTNSQSTKSTIEGWDTSYFYEEAASRVNNSMVDPIDQIISRQPQSYLSQSYNMCKLEIEACMHAEQFLQLPQLESPSLPLVKRPSTMSLVSDNNNDDINDQNRLLLLSNNNDNVTTNTVTDWRALDKFVASQLSHEVETDQGVLLSSFGTNNNPSSDMALMLLQQGNRDEENKLSPFLNASSDCSDIGICVFEK* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0858 352 SUPERFAMILY NAC domain 6 157 IPR036093 GO:0003677|GO:0006355
Mtr5g0858 352 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Mtr5g0858 352 ProSiteProfiles NAC domain profile. 8 157 IPR003441 GO:0003677|GO:0006355
Mtr5g0858 352 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 327 - -
Mtr5g0858 352 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Mtr5g0858 352 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0858 Mtr-Chr5 8468140 8472735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0858 1 351 NAC Transcription Factor Family AT2G18060 62.069 2.75e-151 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr5g0858 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0858 - - aprc:113869508 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0858 5 8468140 8472735 Mtr5g0858 5 8468140 8472735 ECH
Mtr5g0858 5 8468140 8472735 Mtr8g2426 8 34691490 34695087 PCT