Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0855 ATGCATACTCATACACTTCTCATCATTCTCTTACTCTGCGCACCATTCTTATCCTACGCCGTAACCGTCACCGTCACCGAGATCCAAATCCTAACTTCGTTTAAGCTCAACCTCCATGATCCTCTCGGAGCACTCGACGTGGGATCCATCTTCACCGGAAGCACCATGCGACTGGCGCGGCGTTGCTTGTAACAACCACCGTGTCACTGAGCTTCGTCTCCCTCGTCTTCAACTCGCTGGTAAACTCAGGAACATCTTGGCGAGTTACGCATGTTGAGGAAGTTAAGCCTCCGTTCCAATTTCTTCAACGGAACCATTCCGAGAACGCTTTCGAAATGCAAGCTTTTGAGGTTTTTGTTTTTGCAAGATAATCAATTTTCTGGTGATATTCCGCCGGAGATCGGAAACCTCACTGGTCTAATGATTCTAAATGTTGCTCAAAATCACCTCACCGGAACTGTTCCAAGTTCGCTTCCGGTTGGTCTTAAGTATCTTGACGTATCGTCGAATGCGTTCTCCGGTGAGATTCCGGTGACCGTTGGTAATTTATCTCTTCTGCAACTTGTCAACCTTTCGTATAATCAATTCTCCGGTGAGATTCCGGCGAGGTTTGGTGAGCTTCAGAAACTGCAATTTCTATGGCTTGATCATAACTTTCTCGGAGGAACACTACCTTCTGCACTTGCAAATTGTTCTTCGCTGGTGCATTTGAGTGCTGAAGGAAATTCACTTTCCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGATGCTTCAGGTGATGTCACTTTCTCACAATAATCTTACTGGATCAATTCCTGCTTCGGTTTTTTGCAATGTTTCGGTCCACGCGCCGTCGTTGAGAATAGTACAGCTTGGATTCAATGGTTTCACGGATTTCGTTGGAGTTGAAACCAACACGTGTTTCAGTGTTCTTCAGGTTTTGGATATTCAACATAATAGCATAAGAGGCACGTTTCCCTTGTGGTTAACCAATGTAACTACTTTGTCAGTGCTTGATCTTTCGAGTAATGCACTTTCCGGCGAGATTCCGCGGCAAATAGGAAATCTTGCCGGGTTGATGGAGTTAAAGGTGGCTAATAATTCATTCAATGGTGTTATTCCTGTGGAATTAATGAAATGTAAGTCCCTTAGTGTTGTTGATTTTGAAGGAAACAAATTTGCCGGTGAAGTTCCCACATTTTTCGGCAATGTGAAGGGGCTCAAGGTTTTATCACTTGGTGGAAATCAATTCATTGGTTCAGTTCCGGCGAGTTTTGGTAACCTTTCTTTACTTGAAACATTGAGTTTGAGAAGTAATAGATTAAATGGAACTATGCCTGAGATGATAATGAGTTTGAGCAATTTGACAACTTTGGATCTTAGTGATAACAAGTTTAATGGTGAAATTTATGATAGTATTGGGAATTTGAATAGATTAACGGTTCTCAATTTGAGTGGTAATGACTTCTCTGGGAAAATTTCTTCTAGTTTGGGAAATCTTTTCAGGCTAACTACACTTGATTTGAGCAAACAGAATCTCTCTGGAGAGTTACCATTTGAGCTCTCTGGGTTACCGAATCTGCAAGTTATTGCTCTGCAGGAGAACAGGTTATCTGGTGTAGTGCCTGAAGGGTTCAGCAGTTTGATGAGTTTGCAATCTGTGAATCTCAGTTCTAATGCTTTTTCTGGGCAAATTCCTGAGAACTATGGTTTTCTTCGATCGTTGGTTGTTCTTTCGTTGTCTCATAATCGAATTACAGGAACCATTCCTTCAGAAATTGGAAACAGCTCTGCTATTGAAGTTCTTGAGCTTGGGTCGAATTCATTGTCAGGTCAGATTCCTACCGATCTCTCTCGCCTTACCCATTTGAAAGTGCTTGATTTGGGTGGTAACAAGTTAACTGGGGATATGCCTGGGGATATCTCCAAATGTTTGTCATTAACCACATTGTTAGTAGATCACAACCATCTTGGAGGTGTCGTACCAGGATCATTGTCAAATCTATCAAAGCTAGCAATGCTAGATCTCTCTGCTAACAATTTGAGTGGTGAAATTCCTAGTAACTTTTCTATGATGCCTGATTTGGTGTATTTCAATGTGTCGGGGAACAATTTGGAAGGCAAGATACCACAAACTATGGGATCACGGTTCAACAACCCTTCTTTATTTGCTGATAATCAGGGTTTATGTGGGAAGCCATTGGAATCAAAGTGTGAAGGTACAGACAATAGGGACAAAAAGAGGTTGATTGTGTTGGTCATCATCATTGCAATAGGAGCTTTCTTATTAGTTCTGTTTTGCTGTTTTTACATCATCGGCTTATGGAGATGGCGCAAGAAGCTCAAAGAAAAGGTTTCTGGGGAGAAGAAAAAGAGTCCTGCAAGAGCAAGTTCAGGTGCAAGTGGAGGCCGTGGTAGCAGTGAAAATGGTGGGCCAAAACTCGTAATGTTCAACACCAAAGTCACACTTGCTGAAACAATTGAAGCCACAAGACAATTCGACGAAGAGAATGTACTCAGCAGAACAAGGTATGGATTAGTATTCAAGGCCTGCTACAATGATGGAATGGTCCTTTCCATTCGGAGGCTCCCTGATGGATCATTAGACGAGAACATGTTCAGAAAAGAAGCTGAATCACTAGGCAAAATAAAGCACAGAAATTTAACCGTTCTCAGAGGTTACTATGCAGGACCACCAGATATGAGACTCTTGGCCTACGATTACATGCCCAATGGAAACCTTGCAACACTCCTCCAAGAAGCTTCTCACCAAGATGGTCATGTTCTAAATTGGCCAATGAGACACCTCATTGCACTAGGAATCGCCCGTGGATTAGCCTTCATACATCAATCCACAATGGTCCATGGCGACGTAAAACCTCAAAATGTTTTATTTGACGCGGATTTTGAGGCCCATTTATCCGATTTCGGGTTAGAAAGACTAACAGTACCCGCATCAGCATCAGGAGAAGCAGCCTCCACTTCAACATCAGTTGGCACATTGGGTTATGTTTCACCAGAAGCAATCTTAACCAGCGAAATCACGAAAGAGTCCGATGTTTACAGCTTTGGCATTGTGTTGTTGGAACTACTAACAGGAAAGAGACCAGTAATGTTCACACAAGACGAAGACATTGTGAAGTGGGTGAAGAAACAACTTCAAAGGGGTCAAATAACAGAGTTACTTGAACCTGGTTTACTTGAATTAGACCCAGAATCATCAGAATGGGAAGAGTTTTTACTAGGTGTGAAAGTTGGTTTGCTTTGCACAGCACCAGATCCTCTTGATCGACCAACCATGTCCGACATTGTTTTCATGCTCGAAGGCTGTCGTGTTGGTCCTGACATCCCATCCTCAGCTGATCCCACCTCTCAACATTCTCCAGCATAA 3393 0.4291 MHTHTLLIILLLCAPFLSYAVTVTVTEIQILTSFKLNLHDPLGALDVGSIFTGSTMRLARRCL*QPPCH*ASSPSSSTRW*TQEHLGELRMLRKLSLRSNFFNGTIPRTLSKCKLLRFLFLQDNQFSGDIPPEIGNLTGLMILNVAQNHLTGTVPSSLPVGLKYLDVSSNAFSGEIPVTVGNLSLLQLVNLSYNQFSGEIPARFGELQKLQFLWLDHNFLGGTLPSALANCSSLVHLSAEGNSLSGVIPSAISALPMLQVMSLSHNNLTGSIPASVFCNVSVHAPSLRIVQLGFNGFTDFVGVETNTCFSVLQVLDIQHNSIRGTFPLWLTNVTTLSVLDLSSNALSGEIPRQIGNLAGLMELKVANNSFNGVIPVELMKCKSLSVVDFEGNKFAGEVPTFFGNVKGLKVLSLGGNQFIGSVPASFGNLSLLETLSLRSNRLNGTMPEMIMSLSNLTTLDLSDNKFNGEIYDSIGNLNRLTVLNLSGNDFSGKISSSLGNLFRLTTLDLSKQNLSGELPFELSGLPNLQVIALQENRLSGVVPEGFSSLMSLQSVNLSSNAFSGQIPENYGFLRSLVVLSLSHNRITGTIPSEIGNSSAIEVLELGSNSLSGQIPTDLSRLTHLKVLDLGGNKLTGDMPGDISKCLSLTTLLVDHNHLGGVVPGSLSNLSKLAMLDLSANNLSGEIPSNFSMMPDLVYFNVSGNNLEGKIPQTMGSRFNNPSLFADNQGLCGKPLESKCEGTDNRDKKRLIVLVIIIAIGAFLLVLFCCFYIIGLWRWRKKLKEKVSGEKKKSPARASSGASGGRGSSENGGPKLVMFNTKVTLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPDGSLDENMFRKEAESLGKIKHRNLTVLRGYYAGPPDMRLLAYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFIHQSTMVHGDVKPQNVLFDADFEAHLSDFGLERLTVPASASGEAASTSTSVGTLGYVSPEAILTSEITKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTSQHSPA* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0855 1127 ProSiteProfiles Protein kinase domain profile. 831 1114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0855 1127 SMART LRR_typ_2 666 689 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 570 594 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 86 110 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 426 449 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 330 354 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 252 276 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 450 474 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 618 642 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 402 425 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 204 228 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 522 545 IPR003591 -
Mtr5g0855 1127 SMART LRR_typ_2 134 158 IPR003591 -
Mtr5g0855 1127 Pfam Leucine rich repeat 571 631 IPR001611 GO:0005515
Mtr5g0855 1127 Pfam Leucine rich repeat 644 703 IPR001611 GO:0005515
Mtr5g0855 1127 Pfam Leucine rich repeat 500 558 IPR001611 GO:0005515
Mtr5g0855 1127 Pfam Leucine rich repeat 309 365 IPR001611 GO:0005515
Mtr5g0855 1127 Pfam Leucine rich repeat 429 487 IPR001611 GO:0005515
Mtr5g0855 1127 Pfam Protein kinase domain 841 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0855 1127 SUPERFAMILY Protein kinase-like (PK-like) 810 1114 IPR011009 -
Mtr5g0855 1127 SUPERFAMILY L domain-like 77 341 - -
Mtr5g0855 1127 SMART LRR_sd22_2 618 647 - -
Mtr5g0855 1127 SMART LRR_sd22_2 402 428 - -
Mtr5g0855 1127 SMART LRR_sd22_2 330 356 - -
Mtr5g0855 1127 SMART LRR_sd22_2 570 593 - -
Mtr5g0855 1127 SMART LRR_sd22_2 450 476 - -
Mtr5g0855 1127 SMART LRR_sd22_2 204 230 - -
Mtr5g0855 1127 SMART LRR_sd22_2 666 689 - -
Mtr5g0855 1127 Gene3D Phosphorylase Kinase; domain 1 805 906 - -
Mtr5g0855 1127 Gene3D Ribonuclease Inhibitor 448 745 IPR032675 -
Mtr5g0855 1127 Gene3D Ribonuclease Inhibitor 244 347 IPR032675 -
Mtr5g0855 1127 Gene3D Ribonuclease Inhibitor 348 447 IPR032675 -
Mtr5g0855 1127 Gene3D Ribonuclease Inhibitor 158 243 IPR032675 -
Mtr5g0855 1127 SUPERFAMILY RNI-like 336 703 - -
Mtr5g0855 1127 MobiDBLite consensus disorder prediction 784 811 - -
Mtr5g0855 1127 Gene3D Ribonuclease Inhibitor 74 157 IPR032675 -
Mtr5g0855 1127 SMART serkin_6 831 1104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0855 1127 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR KINASE XIAO-RELATED 5 1123 - -
Mtr5g0855 1127 Gene3D Transferase(Phosphotransferase) domain 1 907 1113 - -
Mtr5g0855 1127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 951 963 IPR008271 GO:0004672|GO:0006468
Mtr5g0855 1127 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0855 Mtr-Chr5 8431188 8435546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0855 1 1127 Receptor kinase-like Gene Family AT4G36180 64.460 0.0 1377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Mtr5g0855 Pkinase 7.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0855 - - gmx:100305362 1727.99