Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0851 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAGGCTGCACTTTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGTTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCGAGCGACGTGCCGCGGTGCGACATATGTGAGAATGCACCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATGTTGGTGGCAAAAGAACGCATGGAAGATATCTTCTCTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTAGTAATGCAGACAACCCGGCTTCACAACCTCTAGATCCAGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAACAAAAAATGGGAGAGAAGCAACAAAATCATAGGATGCCTCCGGTTCCAACTTCAGAACCTAATGCTGATGGGAATTCTAAGATGGAAAATAAATTGATTGATTTGAACATGAAGCCTAACAACAGAATACATGAACATGCATCAAATAATCAGCCATAG 558 0.4229 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEPNADGNSKMENKLIDLNMKPNNRIHEHASNNQP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0851 185 CDD Bbox1_BBX-like 4 47 - -
Mtr5g0851 185 Gene3D Classic Zinc Finger 2 91 - -
Mtr5g0851 185 MobiDBLite consensus disorder prediction 104 185 - -
Mtr5g0851 185 SMART bboxneu5 1 47 IPR000315 GO:0008270
Mtr5g0851 185 SMART bboxneu5 51 96 IPR000315 GO:0008270
Mtr5g0851 185 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Mtr5g0851 185 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Mtr5g0851 185 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 184 - -
Mtr5g0851 185 CDD Bbox1_BBX-like 56 96 - -
Mtr5g0851 185 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr5g0851 185 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Mtr5g0851 185 MobiDBLite consensus disorder prediction 144 158 - -
Mtr5g0851 185 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Mtr5g0851 185 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0851 Mtr-Chr5 8372370 8375326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0851 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.202 3.69e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mtr5g0851 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0851 - - gmx:100780544 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0851 5 8372370 8375326 Mtr5g0851 5 8372370 8375326 ECH
Mtr4g2149 4 34978832 34980714 Mtr5g0851 5 8372370 8375326 ECH